def get_poapangenome_result_description(session_state_data):
if session_state_data is None or "jsonpangenome" not in session_state_data:
return []
jsonpangenome = tools.unjsonify_jsonpangenome(
session_state_data["jsonpangenome"])
poapangenome_task_description = get_task_description_layout(jsonpangenome)
return poapangenome_task_description
def read_pangenome_upload(upload_content) -> PangenomeJSON:
if not upload_content:
raise PreventUpdate()
if upload_content.startswith("data:application/json;base64"):
jsonified_pangenome = tools.decode_content(upload_content)
else:
jsonified_pangenome = upload_content
return tools.unjsonify_jsonpangenome(jsonified_pangenome)
def show_input_vis(jsonified_pangenome, mafgraph_elements):
if not jsonified_pangenome:
return []
jsonpangenome = tools.unjsonify_jsonpangenome(jsonified_pangenome)
mafgraph_nodes, mafgraph_edges = mafgraph.get_graph_elements(jsonpangenome)
mafgraph_elements = []
mafgraph_elements.extend(mafgraph_nodes)
mafgraph_elements.extend(mafgraph_edges)
return mafgraph_elements
def update_consensustree_hidden(jsonified_pangenome):
if not jsonified_pangenome:
return []
jsonpangenome = tools.unjsonify_jsonpangenome(jsonified_pangenome)
consensustree_dict = consensustree.get_consensustree_dict(jsonpangenome)
return json.dumps(consensustree_dict)
def update_full_consensustable_hidden(jsonified_pangenome):
if not jsonified_pangenome:
return []
jsonpangenome = tools.unjsonify_jsonpangenome(jsonified_pangenome)
consensustable_data = consensustable.get_full_table_data(jsonpangenome)
return tools.jsonify_df(consensustable_data)