def go():
req_logger.info(
f'new request to /variants_in_region with request_body: {body}')
optional_params = prepare_body_parameters(body)
if body.get(ReqParamKeys.STOP):
interval = parse_genomic_interval_from_dict(body)
result = Coordinator(req_logger, optional_params[8]) \
.variants_in_genomic_interval(interval, optional_params[0], optional_params[1])
else:
gene = parse_gene_from_dict(body)
result = Coordinator(req_logger, optional_params[8])\
.variants_in_gene(gene, optional_params[0], optional_params[1])
return result
def go():
req_logger.info(f'new request to /annotate with request_body: {body}')
assembly = body.get(ReqParamKeys.ASSEMBLY)
if assembly:
assembly = assembly.lower()
if body.get(ReqParamKeys.STOP):
interval = parse_genomic_interval_from_dict(body)
result = Coordinator(req_logger).annotate_interval(
interval, assembly)
else:
variant = parse_variant_from_dict(body)
result = Coordinator(req_logger).annotate_variant(
variant, assembly)
return result
def go():
req_logger.info(
f'new request to /variant_distribution with request_body: {body}')
params = prepare_body_parameters(body)
result = Coordinator(req_logger, params[8]).variant_distribution(
params[2], params[0], params[1], params[3])
return result
def go():
req_logger.info(
f'new request to /download_donors with request_body: {body}')
params = prepare_body_parameters(body)
result = Coordinator(req_logger,
params[8]).download_donors(params[0], params[1])
return result
def go():
req_logger.info(
f'new request to /rarest_variants with request_body: {body}')
params = prepare_body_parameters(body)
result = Coordinator(req_logger, params[8]).rank_variants_by_freq(
params[0], params[1], True, params[4], params[5], params[9])
return result
def go():
req_logger.info(f'new request to /values with attribute {attribute}')
item = parse_name_to_vocabulary(attribute)
if item is None:
req_logger.info('response says the attribute is not valid')
return f'Attribute {attribute} is not a valid parameter for this request', 400
else:
result = Coordinator(req_logger).values_of_attribute(item)
return result