def test_dataset2_rights_allowed_datasets(db, user, dataset_wrapper):
add_group_perm_to_user("Dataset2", user)
result = _get_allowed_datasets_for_user(user, dataset_wrapper.study_id)
assert result == set(["Dataset2"])
result = get_allowed_genotype_studies(user, dataset_wrapper.study_id)
assert result == set(["Study2"])
def test_get_directly_allowed_genotype_data(db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", "Dataset")
allowed_dtasets = get_directly_allowed_genotype_data(user)
print(allowed_dtasets)
assert "Dataset" in allowed_dtasets
assert _user_has_permission_strict(user, "Dataset")
def test_explore_datasets_nauser_and_groups(db, na_user, dataset_wrapper):
add_group_perm_to_user("A", na_user)
add_group_perm_to_dataset("A", "Dataset")
print(get_user_groups(na_user))
print(get_dataset_groups("Dataset"))
assert get_user_groups(na_user) & get_dataset_groups("Dataset")
def test_dataset_group_rights_gives_access_to_all_datasets(
db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", dataset_wrapper.study_id)
assert user_has_permission(user, "Dataset1")
assert user_has_permission(user, "Dataset2")
assert user_has_permission(user, "Dataset")
def test_dataset1_group_rights_gives_access_to_study1_and_study3(
db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", "Dataset1")
assert user_has_permission(user, "Study1")
assert user_has_permission(user, "Study3")
assert not user_has_permission(user, "Study2")
def test_dataset_admin_group_rights(db, user, dataset_wrapper):
add_group_perm_to_user("admin", user)
assert user_has_permission(user, dataset_wrapper.study_id)
result = _get_allowed_datasets_for_user(user, dataset_wrapper.study_id)
assert result == set(["Dataset"])
result = get_allowed_genotype_studies(user, dataset_wrapper.study_id)
assert result == set(["Study1", "Study2", "Study3"])
def test_mixed_dataset_rights_query(db, user, user_client, preview_sources):
data = {
"datasetId": "composite_dataset_ds",
"sources": list(preview_sources),
}
add_group_perm_to_user("inheritance_trio", user)
response = user_client.post(QUERY_VARIANTS_URL,
json.dumps(data),
content_type="application/json")
assert status.HTTP_200_OK == response.status_code
res = response.streaming_content
res = json.loads("".join(map(lambda x: x.decode("utf-8"), res)))
assert len(res) == 14
def test_explore_datasets_users_and_groups(db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", "Dataset")
group = Group.objects.get(name="A")
dataset = Dataset.objects.get(dataset_id="Dataset")
print("===========================================================")
print(group, dir(group))
print("===========================================================")
print("user.groups:", user.groups.all())
print("get_groups_with_perms:", get_groups_with_perms(dataset))
print(get_user_groups(user))
print(get_dataset_groups(dataset))
print(get_dataset_groups("Dataset"))
assert get_user_groups(user) & get_dataset_groups(dataset)
def test_mixed_dataset_rights_download(db, user, user_client,
download_sources):
data = {
"queryData":
json.dumps({
"datasetId": "composite_dataset_ds",
"sources": list(download_sources),
"download": True,
})
}
add_group_perm_to_dataset("new_custom_group", "inheritance_trio")
add_group_perm_to_user("new_custom_group", user)
response = user_client.post(QUERY_VARIANTS_URL,
json.dumps(data),
content_type="application/json")
assert response.status_code == status.HTTP_200_OK
res = list(response.streaming_content)
assert len(res) == 15
def test_mixed_dataset_rights_with_study_filters(db, user, user_client,
preview_sources):
data = {
"datasetId": "composite_dataset_ds",
"studyFilters": [{
"studyId": "quads_f1"
}],
"sources": list(preview_sources),
}
add_group_perm_to_dataset("new_custom_group", "inheritance_trio")
add_group_perm_to_user("new_custom_group", user)
response = user_client.post(QUERY_VARIANTS_URL,
json.dumps(data),
content_type="application/json")
assert status.HTTP_200_OK == response.status_code
res = response.streaming_content
res = json.loads("".join(map(lambda x: x.decode("utf-8"), res)))
print(res)
assert len(res) == 0
def test_dataset_rights(db, user, dataset_wrapper):
add_group_perm_to_user(dataset_wrapper.study_id, user)
assert user_has_permission(user, dataset_wrapper.study_id)
def test_get_allowed_dataset_from_parent(db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", "Dataset")
allowed_datasets = _get_allowed_datasets_for_user(user, "Dataset1")
assert "Dataset1" in allowed_datasets
def test_dataset1_group_rights(db, user, dataset_wrapper):
add_group_perm_to_user("A", user)
add_group_perm_to_dataset("A", "Dataset1")
assert user_has_permission(user, dataset_wrapper.study_id)
