def _test():
import rax
import curry
modules = Modules()
modules.use('~/Public/modulefiles')
modules.load('python/2.7.1', 'fax/devel')
daxproj = dax.Project('test', 'lcls','fah', 10009)
locations = dax.read_filelist('tests/p10009.xtclist.test2.chirp', kind='chirp', host='lclsstor01.crc.nd.edu', port=9987)
locations = dax.read_filelist('tests/p10009.xtclist.test2')
daxproj.load_locations(_test_dax_read_path, locations)
daxproj.write_dax()
data = daxproj.locations('*.xtc', files=True)
raxproj = rax.Project()
mapper = Mapper(curry.curry(_test_MyFunc), modules)
mapper.process(data, raxproj, chunksize=5)
raxproj.write('/tmp/raxproj')
prefix = '/afs/crc.nd.edu/user/c/cabdulwa/fax.git/max/tests'
struct = os.path.join(prefix, 'protein.pdb')
ndx = os.path.join(prefix, 'System.ndx')
devnull = '/dev/null'
fn = gmx.g_rms(stdout=devnull, stderr=devnull)
return fn(f=path, s=struct, n=ndx)
modules = max.Modules()
modules.use('~cabdulwa/Public/modulefiles')
modules.load('python/2.7.1', 'numpy', 'ezlog/devel', 'ezpool/devel', 'dax/devel', 'gromacs', 'gmx')
daxproj = dax.Project('/tmp/test', 'lcls', 'fah', 10009)
locations = dax.read_filelist('tests/p10009.xtclist.test2.chirp',
kind='chirp',
host='lclsstor01.crc.nd.edu',
port=9987)
daxproj.load_locations(read_path, locations)
daxproj.write_dax()
data = daxproj.locations('*.xtc', files=True)
raxproj = rax.Project()
mapper = max.Mapper(rmsd, modules=modules)
mapper.process(data, raxproj, chunksize=5)
raxproj.write('/tmp/raxproj')