def build_schema(self):
schema = super(CellResource,self).build_schema()
schema['fields'] = get_detail_schema(
Cell(),['cell',''], extra_properties=self._meta.extra_properties)
schema['batch_fields'] = get_detail_schema(
CellBatch(),['cellbatch',''])
return schema
def build_schema(self):
schema = super(UnclassifiedPerturbagenResource,self).build_schema()
schema['fields'] = get_detail_schema(
Unclassified(),['unclassified',''])
schema['batch_fields'] = get_detail_schema(
UnclassifiedBatch(),['unclassifiedbatch',''])
return schema
def build_schema(self):
schema = super(OtherReagentResource,self).build_schema()
schema['fields'] = get_detail_schema(
OtherReagent(),['otherreagent',''])
schema['batch_fields'] = get_detail_schema(
OtherReagentBatch(),['otherreagentbatch',''])
return schema
def build_schema(self):
schema = super(IpscResource,self).build_schema()
schema['fields'] = get_detail_schema(
Ipsc(),['ipsc',''],
extra_properties=self._meta.extra_properties)
schema['batch_fields'] = get_detail_schema(
IpscBatch(),['ipscbatch',''])
return schema
def build_schema(self):
schema = super(SmallMoleculeResource,self).build_schema()
schema['fields'] = get_detail_schema(
SmallMolecule(),['smallmolecule',''],
extra_properties=self._meta.extra_properties)
schema['batch_fields'] = get_detail_schema(
SmallMoleculeBatch(),['smallmoleculebatch',''],
extra_properties=self._meta.batch_extra_properties)
return schema
def build_schema(self):
fields = get_detail_schema(
DataSet(), 'dataset', lambda x: x.show_in_detail )
fields['datapointFile'] = get_schema_fieldinformation(
'datapoint_file','')
fields['safVersion'] = get_schema_fieldinformation('saf_version','')
fields['screeningFacility'] = get_schema_fieldinformation(
'screening_facility','')
schema['fields'] = OrderedDict(sorted(
fields.items(), key=lambda x: x[0]))
return schema
def build_schema(self):
fields = get_detail_schema(
DataSet(), 'dataset', lambda x: x.show_in_detail )
fields['datapointFile'] = get_schema_fieldinformation(
'datapoint_file','')
fields['safVersion'] = get_schema_fieldinformation('saf_version','')
fields['screeningFacility'] = get_schema_fieldinformation(
'screening_facility','')
schema['fields'] = OrderedDict(sorted(
fields.items(), key=lambda x: x[0]))
return schema
def build_schema(self):
schema = super(DataSetResource,self).build_schema()
original_dict = schema['fields'] # TODO: reincorporate this information (this default information is about the DB schema definition)
fields = get_detail_schema(DataSet(), 'dataset', lambda x: x.show_in_detail )
# Custom fields for SAF: TODO: generate the names here from the fieldinformation
fields['datapointFile'] = get_schema_fieldinformation('datapoint_file','')
fields['safVersion'] = get_schema_fieldinformation('saf_version','')
fields['screeningFacility'] = get_schema_fieldinformation('screening_facility','')
schema['fields'] = OrderedDict(sorted(fields.items(), key=lambda x: x[0])) # sort alpha, todo sort on fi.order
ds_fieldinformation = DataSetDataResource.get_datasetdata_column_fieldinformation()
ds_fieldinformation.append(('datapoint_value',get_fieldinformation('datapoint_value',[''])) )
ds_fieldinformation.append(('timepoint',get_fieldinformation('timepoint',[''])) )
ds_fieldinformation.append(('timepoint_unit',get_fieldinformation('timepoint_unit',[''])) )
ds_fieldinformation.append(('timepoint_description',get_fieldinformation('timepoint_description',[''])) )
meta_field_info = get_listing(FieldInformation(),['fieldinformation'])
fields = {}
for field,fi in ds_fieldinformation:
field_schema_info = {}
for item in meta_field_info.items():
meta_fi_attr = item[0]
meta_fi = item[1]['fieldinformation']
field_schema_info[meta_fi.get_camel_case_dwg_name()] = getattr(fi,meta_fi_attr)
fields[fi.get_camel_case_dwg_name()]= field_schema_info
schema['datasetDataFile'] = OrderedDict(sorted(fields.items(), key=lambda x: x[0])) # sort alpha, todo sort on fi.order
dc_fieldinformation = FieldInformation.objects.all().filter(table='datacolumn', show_in_detail=True)
datapoint_fields = {}
for fi in dc_fieldinformation:
field_schema_info = {}
for item in meta_field_info.items():
meta_fi_attr = item[0]
meta_fi = item[1]['fieldinformation']
field_schema_info[meta_fi.get_camel_case_dwg_name()] = getattr(fi,meta_fi_attr)
datapoint_fields[fi.get_camel_case_dwg_name()]= field_schema_info
schema['datapointInformation'] = OrderedDict(sorted(datapoint_fields.items(), key=lambda x: x[0])) # sort alpha, todo sort on fi.order
return schema
def build_schema(self):
schema = super(LibraryResource,self).build_schema()
schema['fields'] = get_detail_schema(Library(),['library',''])
return schema
def build_schema(self):
schema = super(ProteinResource,self).build_schema()
schema['fields'] = get_detail_schema(Protein(),['protein',''])
schema['batch_fields'] = get_detail_schema(
ProteinBatch(),['protein',''])
return schema
def build_schema(self):
schema = super(AntibodyResource,self).build_schema()
schema['fields'] = get_detail_schema(Antibody(),['antibody',''])
schema['batch_fields'] = get_detail_schema(
AntibodyBatch(),['antibodybatch',''])
return schema
def build_schema(self):
schema = super(SmallMoleculeResource,self).build_schema()
schema['fields'] = get_detail_schema(SmallMolecule(),['smallmolecule'])
return schema
def build_schema(self):
schema = super(DataSetResource,self).build_schema()
# TODO: build the schema from the fieldinformation
schema['fields'] = get_detail_schema(DataSet(),['dataset'])
return schema
def build_schema(self):
schema = super(CellResource,self).build_schema()
schema['fields'] = get_detail_schema(Cell(),['cell'])
return schema
def build_schema(self):
schema = super(LibraryResource,self).build_schema()
schema['fields'] = get_detail_schema(Library(),['library'])
return schema
def build_schema(self):
schema = super(ProteinResource,self).build_schema()
schema['fields'] = get_detail_schema(Protein(),['protein'])
return schema
def build_schema(self):
schema = super(OtherReagentResource,self).build_schema()
schema['fields'] = get_detail_schema(OtherReagent(),['otherreagent'])
return schema
def build_schema(self):
schema = super(AntibodyResource,self).build_schema()
schema['fields'] = get_detail_schema(Antibody(),['antibody'])
return schema
