def evaluation_occupancy_statistics(n, mode="arrival"):
day_profile1 = pd.read_pickle('./dataset/dataframe_all_binary.pkl')
day_profile1 = day_profile1.fillna(0)
day_profile1[day_profile1 > 0] = 1
res = 15
day_profile = day_profile1.iloc[:90, 0::
res] # subsample the database to improve the speed for demonstration purpose
day_profile2 = day_profile1.iloc[
90:135, 0::
res] # subsample the database to improve the speed for demonstration purpose
rep_mode = 'mean'
anonymity_level = n
sanitized_profile_best = util.sanitize_data(
day_profile,
distance_metric='self-defined',
anonymity_level=anonymity_level,
rep_mode=rep_mode,
mode=mode)
sanitized_profile_baseline = util.sanitize_data(
day_profile,
distance_metric='euclidean',
anonymity_level=anonymity_level,
rep_mode=rep_mode)
loss_best_metric = pe.get_statistics_loss(
data_gt=day_profile, data_sanitized=sanitized_profile_best, mode=mode)
loss_generic_metric = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_baseline,
mode=mode)
df_subsampled_from = day_profile2.sample(frac=1)
subsample_size_max = int(comb(len(df_subsampled_from), 2))
print('total number of pairs is %s' % len(df_subsampled_from))
# step 4: sample a subset of pre-sanitized database and form the data points into pairs
subsample_size = int(round(subsample_size_max))
sp = Subsampling(data=df_subsampled_from)
data_pair, data_pair_all_index = sp.uniform_sampling(
subsample_size=subsample_size, seed=None)
# User receives the data pairs and label the similarity
sim = Similarity(data=data_pair)
sim.extract_interested_attribute(interest='statistics', stat_type=mode)
similarity_label, data_subsample = sim.label_via_silhouette_analysis(
range_n_clusters=range(2, 8))
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
lm = Linear_Metric()
lm.train(data_pair, similarity_label)
dm = Deep_Metric()
dm.train(data_pair, similarity_label)
# step 6: the original database is privatized using the learned metric
sanitized_profile = util.sanitize_data(day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=lm)
sanitized_profile_deep = util.sanitize_data(
day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=dm)
# (optionally for evaluation purpose) Evaluating the information loss of the sanitized database
loss_learned_metric = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile.round(),
mode=mode)
loss_learned_metric_deep = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_deep.round(),
mode=mode)
print('anonymity level %s' % anonymity_level)
print("sampled size %s" % subsample_size)
print("information loss with best metric %s" % loss_best_metric)
print("information loss with generic metric %s" % loss_generic_metric)
print("information loss with learned metric %s" % loss_learned_metric)
print("information loss with learned metric deep %s" %
(loss_learned_metric_deep))
return (sanitized_profile_best, sanitized_profile_baseline,
sanitized_profile,
sanitized_profile_deep), (loss_best_metric, loss_generic_metric,
loss_learned_metric,
loss_learned_metric_deep), subsample_size
subsample_size = int(round(subsample_size_max))
sp = Subsampling(data=df_subsampled_from)
data_pair = sp.uniform_sampling(subsample_size=subsample_size, seed=None)
# User receives the data pairs and label the similarity
sim = Similarity(data=data_pair)
sim.extract_interested_attribute(interest=interest, window=window)
similarity_label, data_subsample = sim.label_via_silhouette_analysis(
range_n_clusters=range(2, 8))
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
lm = Linear_Metric()
lm.train(data_pair, similarity_label)
dm = Deep_Metric()
dm.train(data_pair, similarity_label)
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
# lam_vec is a set of candidate lambda's for weighting the l1-norm penalty in the metric learning optimization problem.
# The lambda that achieves lowest testing error will be selected for generating the distance metric
# dist_metric = mel.learn_with_simialrity_label_regularization(data=data_pair,
# label=similarity_label,
# lam_vec=[0, 0.1, 1, 10],
# train_portion=0.8)
# step 6: the original database is privatized using the learned metric
# sanitized_profile = util.sanitize_data(day_profile, distance_metric="mahalanobis",
# anonymity_level=anonymity_level, rep_mode=rep_mode, VI=dist_metric)
sanitized_profile = util.sanitize_data(day_profile,
def evaluation_occupancy_window(n):
# step 1: get the database to be published
day_profile = pd.read_pickle('./dataset/dataframe_all_binary.pkl')
day_profile = day_profile.fillna(0)
day_profile = day_profile.iloc[0:90, 0::60]
rep_mode = 'mean'
anonymity_level = n # desired anonymity level
# step 2: data user specifies his/her interest. In the example, the data user is interested in preserving the
# information of a segment of entire time series. In this case, he/she would also need to specify the starting and
# ending time of the time series segment of interest.
interest = 'segment'
window = [
11, 15
] # window specifies the starting and ending time of the period that the data user is interested in
# step 3: pre-sanitize the database
sanitized_profile_best = util.sanitize_data(
day_profile,
distance_metric='self-defined',
anonymity_level=anonymity_level,
rep_mode=rep_mode,
mode=interest,
window=window)
sanitized_profile_baseline = util.sanitize_data(
day_profile,
distance_metric='euclidean',
anonymity_level=anonymity_level,
rep_mode=rep_mode)
loss_best_metric = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_best,
window=window)
loss_generic_metric = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_baseline.round(),
window=window)
df_subsampled_from = sanitized_profile_baseline.drop_duplicates().sample(
frac=1)
subsample_size_max = int(comb(len(df_subsampled_from), 2))
print('total number of pairs is %s' % len(df_subsampled_from))
# step 4: sample a subset of pre-sanitized database and form the data points into pairs
subsample_size = int(round(subsample_size_max))
sp = Subsampling(data=df_subsampled_from)
data_pair, data_pair_all_index = sp.uniform_sampling(
subsample_size=subsample_size, seed=None)
# User receives the data pairs and label the similarity
sim = Similarity(data=data_pair)
sim.extract_interested_attribute(interest=interest, window=window)
similarity_label, data_subsample = sim.label_via_silhouette_analysis(
range_n_clusters=range(2, 8))
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
lm = Linear_Metric()
lm.train(data_pair, similarity_label)
dm = Deep_Metric()
dm.train(data_pair, similarity_label)
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
# lam_vec is a set of candidate lambda's for weighting the l1-norm penalty in the metric learning optimization problem.
# The lambda that achieves lowest testing error will be selected for generating the distance metric
# step 6: the original database is privatized using the learned metric
sanitized_profile = util.sanitize_data(day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=lm)
sanitized_profile_deep = util.sanitize_data(
day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=dm)
# (optionally for evaluation purpose) Evaluating the information loss of the sanitized database
loss_learned_metric = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile.round(),
window=window)
loss_learned_metric_deep = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_deep.round(),
window=window)
print('anonymity level %s' % anonymity_level)
print("sampled size %s" % subsample_size)
print("information loss with best metric %s" % loss_best_metric)
print("information loss with generic metric %s" % loss_generic_metric)
print("information loss with learned metric %s" % loss_learned_metric)
print("information loss with learned metric deep %s" %
(loss_learned_metric_deep))
return (sanitized_profile_best, sanitized_profile_baseline,
sanitized_profile,
sanitized_profile_deep), (loss_best_metric, loss_generic_metric,
loss_learned_metric,
loss_learned_metric_deep), subsample_size
pairdata_label_active_deep = []
sp.reset()
k = k_init
while k <= run_sample_size:
pairdata, pairdata_idx = sp.active_sampling(dist_metric=dm,
k_init=k_init,
batch_size=1,
seed=seed_vec[mc_i])
pairdata_active_deep = pairdata_active_deep + pairdata
similarity_label = similarity_label_all_series.loc[
pairdata_idx].tolist()
pairdata_label_active_deep = pairdata_label_active_deep + similarity_label
dm = Deep_Metric()
dm.train(pairdata_active_deep, pairdata_label_active_deep)
sanitized_profile_deep = util.sanitize_data(
day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=dm)
loss_learned_metric_deep = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_deep.round(),
mode=mode)
loss_active_mc_deep.append(loss_learned_metric_deep)
# pairdata_each_mc_deep.append(pairdata_active_deep)
pairlabel_each_mc_deep.append(pairdata_label_active_deep)
def evaluation_occupancy_window(n, df_subsampled_from, day_profile):
rep_mode = 'mean'
anonymity_level = n # desired anonymity level
interest = 'segment'
window = [11, 15]
subsample_size_max = int(comb(len(df_subsampled_from), 2))
# step 4: sample a subset of pre-sanitized database and form the data points into pairs
subsample_size = int(round(subsample_size_max))
sp = Subsampling(data=df_subsampled_from)
data_pair, data_pair_all_index = sp.uniform_sampling(
subsample_size=subsample_size, seed=None)
# User receives the data pairs and label the similarity
sim = Similarity(data=data_pair)
sim.extract_interested_attribute(interest=interest, window=window)
similarity_label, data_subsample = sim.label_via_silhouette_analysis(
range_n_clusters=range(2, 8))
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
lm = Linear_Metric()
lm.train(data_pair, similarity_label)
dm = Deep_Metric()
dm.train(data_pair, similarity_label)
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
# lam_vec is a set of candidate lambda's for weighting the l1-norm penalty in the metric learning optimization problem.
# The lambda that achieves lowest testing error will be selected for generating the distance metric
# step 6: the original database is privatized using the learned metric
sanitized_profile = util.sanitize_data(day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=lm)
sanitized_profile_deep = util.sanitize_data(
day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=dm)
# (optionally for evaluation purpose) Evaluating the information loss of the sanitized database
loss_learned_metric = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile.round(),
window=window)
loss_learned_metric_deep = pe.get_information_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_deep.round(),
window=window)
print('anonymity level %s' % anonymity_level)
print("sampled size %s" % subsample_size)
print("information loss with best metric %s" % loss_best_metric)
print("information loss with generic metric %s" % loss_generic_metric)
print("information loss with learned metric %s" % loss_learned_metric)
print("information loss with learned metric deep %s" %
(loss_learned_metric_deep))
return (sanitized_profile_best, sanitized_profile_baseline,
sanitized_profile,
sanitized_profile_deep), (loss_best_metric, loss_generic_metric,
loss_learned_metric,
loss_learned_metric_deep), subsample_size
def evaluation_total_usage(n, df_subsampled_from, day_profile):
interest = 'window-usage'
window = [17, 21]
anonymity_level = n
rep_mode = 'mean'
subsample_size_max = int(comb(len(df_subsampled_from), 2))
print('total number of pairs is %s' % subsample_size_max)
# step 4: sample a subset of pre-sanitized database and form the data points into pairs
subsample_size = int(round(subsample_size_max))
sp = Subsampling(data=df_subsampled_from)
data_pair, data_pair_all_index = sp.uniform_sampling(
subsample_size=subsample_size, seed=None)
# User receives the data pairs and label the similarity
sim = Similarity(data=data_pair)
sim.extract_interested_attribute(interest='statistics',
stat_type=interest,
window=window)
similarity_label, data_subsample = sim.label_via_silhouette_analysis(
range_n_clusters=range(2, 8))
# step 5: PAD learns a distance metric that represents the interest of the user from the labeled data pairs
lm = Linear_Metric()
lm.train(data_pair, similarity_label)
dm = Deep_Metric()
dm.train(data_pair, similarity_label)
# step 6: the original database is privatized using the learned metric
sanitized_profile_deep = util.sanitize_data(
day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=dm,
window=window)
sanitized_profile = util.sanitize_data(day_profile,
distance_metric="deep",
anonymity_level=anonymity_level,
rep_mode=rep_mode,
deep_model=lm,
window=window)
# (optionally for evaluation purpose) Evaluating the information loss of the sanitized database
loss_learned_metric_deep = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile_deep.round(),
mode=interest,
window=window)
loss_learned_metric = pe.get_statistics_loss(
data_gt=day_profile,
data_sanitized=sanitized_profile,
mode=interest,
window=window)
print('anonymity level %s' % anonymity_level)
print("sampled size %s" % subsample_size)
print("information loss with best metric %s" % loss_best_metric)
print("information loss with generic metric %s" % loss_generic_metric)
print("information loss with learned metric %s" % loss_learned_metric)
print("information loss with learned metric deep %s" %
(loss_learned_metric_deep))
return (sanitized_profile_best, sanitized_profile_baseline,
sanitized_profile,
sanitized_profile_deep), (loss_best_metric, loss_generic_metric,
loss_learned_metric,
loss_learned_metric_deep), subsample_size