Exemple #1
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    def test_get_sign(self):
        dim = 100
        act = 10
        gen = Generator(dim, act)

        signs = [str(i) for i in range(10)]
        sign_index = TrieSignIndex(gen, vocabulary=signs)

        for s in signs:
            self.assertTrue(sign_index.contains(s))
            id = sign_index.get_id(s)
            self.assertTrue(sign_index.contains_id(id))
            s2 = sign_index.get_sign(id)
            self.assertEqual(s,s2)\



        #get sign for an id that doesn't exist
        id = 86
        s = sign_index.get_sign(id)
        self.assertEqual(s,None)
        self.assertFalse(sign_index.contains_id(id))

        self.assertEqual(len(sign_index.sign_trie),len(signs))

        self.assertTrue(sign_index.contains_id(len(signs)-1))
        self.assertFalse(sign_index.contains_id(len(signs)))
Exemple #2
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    def test_contains(self):
        dim = 100
        act = 10

        gen = Generator(dim, act)
        sign_index = TrieSignIndex(generator=gen)

        sign_index.add("0")
        self.assertTrue(sign_index.contains("0"))
        self.assertFalse(sign_index.contains("1"))

        sign_index.remove("0")

        self.assertFalse(sign_index.contains("0"))
Exemple #3
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    def test_size(self):
        gen = Generator(100, 10)
        sign_index = TrieSignIndex(generator=gen)

        # adding elements should increase size
        self.assertEqual(len(sign_index), 0)

        sign_index.add("0")
        self.assertEqual(len(sign_index), 1)

        # duplicated elements are not added
        sign_index.add("0")
        self.assertEqual(len(sign_index), 1)

        sign_index.add("1")
        self.assertEqual(len(sign_index), 2)

        # removing elements should reduce size
        size_before = len(sign_index)

        sign_index.remove("0")
        size_after = len(sign_index)
        self.assertEqual(size_after, size_before - 1)
Exemple #4
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    def test_save(self):
        dim = 100
        act = 10
        gen = Generator(dim, act)

        signs = [str(i) for i in range(10)]
        sign_index = TrieSignIndex(gen, vocabulary=signs)

        filename = "index.hdf5"
        directory = os.path.dirname(os.path.abspath(__file__))
        output_file = directory+"/"+filename

        self.assertFalse(os.path.exists(output_file))
        try:
            sign_index.save(output_file)
            self.assertTrue(os.path.exists(output_file))

            h5file = h5py.File(output_file,'r')

            h5signs = h5file["signs"]
            h5ri = h5file["ri"]

            self.assertEqual(len(h5signs),len(signs))

            print(h5ri[0])
            print(h5ri.attrs["k"])
            print(h5ri.attrs["s"])
            print(h5ri.attrs["state"].tostring())

            h5file.close()
        except:
            raise
        finally:
            if os.path.exists(output_file):
                os.remove(output_file)
        self.assertFalse(os.path.exists(output_file))
Exemple #5
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    def test_get_ri(self):
        dim = 100
        act = 10

        gen = Generator(dim, act)
        sign_index = TrieSignIndex(gen)

        sign_index.add("0")
        self.assertTrue(sign_index.contains("0"))
        ri0 = sign_index.get_ri("0")
        self.assertIsInstance(ri0, RandomIndex)

        self.assertEqual(ri0.dim, dim)
Exemple #6
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    def test_load(self):
        """ The ids should be the same when the index is loaded back up

        """
        dim = 100
        act = 10
        gen = Generator(dim, act)

        signs1 = [str(i) for i in range(1000)]
        index1 = TrieSignIndex(gen, vocabulary=signs1)

        filename = "index.hdf5"
        directory = os.path.dirname(os.path.abspath(__file__))
        index_file = directory + "/" + filename

        self.assertFalse(os.path.exists(index_file))
        try:
            index1.save(index_file)
            self.assertTrue(os.path.exists(index_file))

            index2 = TrieSignIndex.load(index_file)
            self.assertEqual(len(index2),len(index1))

            for sign in signs1:
                self.assertTrue(index1.contains(sign))
                self.assertTrue(index2.contains(sign))
                id1 = index1.get_id(sign)
                id2 = index2.get_id(sign)
                self.assertEqual(id1,id2)

                ri1 = index1.get_ri(sign).to_vector()
                ri2 = index2.get_ri(sign).to_vector()

                np.testing.assert_array_equal(ri1,ri2)
        except:
            raise
        finally:
            if os.path.exists(index_file):
                os.remove(index_file)
        self.assertFalse(os.path.exists(index_file))
# iterates over lines but loads them as chunks
#n_rows = 100000
#sentences = chunk_it(corpus_dataset,n_rows=n_rows, chunk_size=20000)
n_rows = len(corpus_dataset)
sentences = chunk_it(corpus_dataset, chunk_size=100000)

pipeline = WaCKyPipe(datagen=sentences)
# ======================================================================================
# Load Vocabulary
# ======================================================================================
vocab_file = data_dir + "wacky_vocab_6M_spacy.hdf5"
vocab_hdf5 = h5py.File(vocab_file, 'r')

ri_gen = Generator(dim=k, num_active=s)
print("Loading Vocabulary...")
sign_index = TrieSignIndex(ri_gen, list(vocab_hdf5["vocabulary"][:]), pregen_indexes=False)

if subsampling:
    freq = TrieSignIndex.map_frequencies(list(vocab_hdf5["vocabulary"][:]),
                                         list(vocab_hdf5["frequencies"][:]),
                                         sign_index)

    total_freq = np.sum(vocab_hdf5["frequencies"])

print("done")

# ======================================================================================
# Neural Random Projections Model
# ======================================================================================
pos_labels = Input(n_units=k, name="yp")
neg_labels = Input(n_units=k, name="yn")
Exemple #8
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def run(**kwargs):
    arg_dict.from_dict(kwargs)
    args = arg_dict.to_namespace()

    # ======================================================================================
    # Load Corpus & Vocab
    # ======================================================================================
    corpus = PTBReader(path=args.corpus, mark_eos=args.mark_eos)
    corpus_stats = h5py.File(os.path.join(args.corpus, "ptb_stats.hdf5"),
                             mode='r')
    ri_generator = Generator(dim=args.k_dim,
                             num_active=args.s_active,
                             symmetric=True)
    # vocab = marisa_trie.Trie(corpus_stats["vocabulary"])

    index = TrieSignIndex(generator=ri_generator,
                          vocabulary=corpus_stats["vocabulary"],
                          pregen_indexes=True)

    # for i in range(1000):
    #    w = index.get_sign(i)
    #    ri: RandomIndex = index.get_ri(w)
    #    print(w)
    #    print(ri)
    #    print(ri)
    #    print(index.get_id(w))

    # pre-gen indices for vocab, we could do this iteratively ... same thing
    # ris = [ri_generator.generate() for _ in range(len(vocab))]
    # print(vocab.keys())

    # index = TrieSignIndex(generator=ri_generator,vocabulary=vocab)

    # TODO could create the NRP model with NCE only and input with random indices could be passed to the model
    # dynamically, also for inference and evaluation, we could either work with a dynamic encoding process
    # or give it the current ri tensor with all the known ris if we know there are no OOV words (words that might not
    # have been seen during training.

    # table with random indices for all known symbols
    # ri_tensor = RandomIndexTensor.from_ri_list(ris, k=args.k_dim, s=args.s_active)

    def corpus_pipeline(corpus_stream,
                        n_gram_size=args.ngram_size,
                        epochs=1,
                        batch_size=args.batch_size,
                        shuffle=args.shuffle,
                        flatten=False):
        """ Corpus Processing Pipeline.

        Transforms the corpus reader -a stream of sentences or words- into a stream of n-gram batches.

        Args:
            n_gram_size: the size of the n-gram window
            corpus_stream: the stream of sentences of words
            epochs: number of epochs we want to iterate over this corpus
            batch_size: batch size for the n-gram batch
            shuffle: if true, shuffles the n-grams according to a buffer size
            flatten: if true sliding windows are applied over a stream of words rather than within each sentence
            (n-grams can cross sentence boundaries)
        """

        if flatten:
            word_it = flatten_it(corpus_stream)
            n_grams = window_it(word_it, n_gram_size)
        else:
            sentence_n_grams = (window_it(sentence, n_gram_size)
                                for sentence in corpus_stream)
            n_grams = flatten_it(sentence_n_grams)

        # at this point this is an n_gram iterator
        # n_grams = ([vocab[w] for w in ngram] for ngram in n_grams)
        n_grams = ([index.get_id(w) for w in ngram] for ngram in n_grams)

        if epochs > 1:
            n_grams = repeat_it(n_grams, epochs)

        if shuffle:
            n_grams = shuffle_it(n_grams, args.shuffle_buffer_size)

        n_grams = batch_it(n_grams, size=batch_size, padding=False)
        return n_grams

    # print("counting dataset samples...")
    training_len = sum(1 for _ in corpus_pipeline(
        corpus.training_set(), batch_size=1, epochs=1, shuffle=False))
    validation_len = None
    test_len = None
    if args.eval_progress:
        validation_len = sum(1 for _ in corpus_pipeline(
            corpus.validation_set(), batch_size=1, epochs=1, shuffle=False))
        test_len = sum(1 for _ in corpus_pipeline(
            corpus.test_set(), batch_size=1, epochs=1, shuffle=False))
    # print("done")
    # print("dset len ", training_len)

    # ======================================================================================
    # Load Params, Prepare results assets
    # ======================================================================================
    # Experiment parameter summary
    res_param_filename = os.path.join(
        args.out_dir, "params_{id}_{run}.csv".format(id=args.id, run=args.run))
    with open(res_param_filename, "w") as param_file:
        writer = csv.DictWriter(f=param_file, fieldnames=arg_dict.keys())
        writer.writeheader()
        writer.writerow(arg_dict)
        param_file.flush()

    # make dir for model checkpoints
    if args.save_model:
        model_ckpt_dir = os.path.join(
            args.out_dir, "model_{id}_{run}".format(id=args.id, run=args.run))
        os.makedirs(model_ckpt_dir, exist_ok=True)
        model_path = os.path.join(
            model_ckpt_dir, "nnlm_{id}_{run}.ckpt".format(id=args.id,
                                                          run=args.run))

    # start perplexity file
    ppl_header = ["id", "run", "epoch", "step", "lr", "dataset", "perplexity"]
    ppl_fname = os.path.join(
        args.out_dir, "perplexity_{id}_{run}.csv".format(id=args.id,
                                                         run=args.run))

    ppl_file = open(ppl_fname, "w")
    ppl_writer = csv.DictWriter(f=ppl_file, fieldnames=ppl_header)
    ppl_writer.writeheader()

    # ======================================================================================
    # MODEL
    # ======================================================================================
    # Configure weight initializers based on activation functions
    if args.h_act == "relu":
        h_act = tx.relu
        h_init = tx.he_normal_init()
    elif args.h_act == "tanh":
        h_act = tx.tanh
        h_init = tx.glorot_uniform()
    elif args.h_act == "elu":
        h_act = tx.elu
        h_init = tx.he_normal_init()
    elif args.h_act == "selu":
        h_act = tf.nn.selu
        h_init = tx.glorot_uniform()

    # Configure embedding and logit weight initializers
    if args.embed_init == "normal":
        embed_init = tx.random_normal(mean=0., stddev=args.embed_init_val)
    elif args.embed_init == "uniform":
        embed_init = tx.random_uniform(minval=-args.embed_init_val,
                                       maxval=args.embed_init_val)

    if args.logit_init == "normal":
        logit_init = tx.random_normal(mean=0., stddev=args.logit_init_val)
    elif args.logit_init == "uniform":
        logit_init = tx.random_uniform(minval=-args.logit_init_val,
                                       maxval=args.logit_init_val)

    f_init = None
    if args.use_f_predict:
        if args.f_init == "normal":
            f_init = tx.random_normal(mean=0., stddev=args.f_init_val)
        elif args.f_init == "uniform":
            f_init = tx.random_uniform(minval=-args.f_init_val,
                                       maxval=args.f_init_val)

    model = NRP(ctx_size=args.ngram_size - 1,
                sign_index=index,
                k_dim=args.k_dim,
                s_active=args.s_active,
                embed_dim=args.embed_dim,
                h_dim=args.h_dim,
                embed_init=embed_init,
                logit_init=logit_init,
                num_h=args.num_h,
                h_activation=h_act,
                h_init=h_init,
                use_dropout=args.dropout,
                embed_dropout=args.embed_dropout,
                keep_prob=args.keep_prob,
                l2_loss=args.l2_loss,
                l2_loss_coef=args.l2_loss_coef,
                f_init=f_init,
                embed_share=args.embed_share,
                logit_bias=args.logit_bias,
                use_nce=args.nce,
                nce_samples=args.nce_samples,
                nce_noise_amount=0.04)

    model_runner = tx.ModelRunner(model)

    # Input params can be changed during training by setting their value
    # lr_param = tx.InputParam(init_value=args.lr)
    lr_param = tensorx.train.EvalStepDecayParam(
        value=args.lr,
        improvement_threshold=args.eval_threshold,
        less_is_better=True,
        decay_rate=args.lr_decay_rate,
        decay_threshold=args.lr_decay_threshold)
    if args.optimizer == "sgd":
        optimizer = tf.train.GradientDescentOptimizer(
            learning_rate=lr_param.tensor)
    elif args.optimizer == "adam":
        optimizer = tf.train.AdamOptimizer(learning_rate=lr_param.tensor,
                                           beta1=args.optimizer_beta1,
                                           beta2=args.optimizer_beta2,
                                           epsilon=args.optimizer_epsilon)
    elif args.optimizer == "ams":
        optimizer = tx.AMSGrad(learning_rate=lr_param.tensor,
                               beta1=args.optimizer_beta1,
                               beta2=args.optimizer_beta2,
                               epsilon=args.optimizer_epsilon)

    def clip_grad_global(grads):
        grads, _ = tf.clip_by_global_norm(grads, 12)
        return grads

    def clip_grad_local(grad):
        return tf.clip_by_norm(grad, args.clip_value)

    if args.clip_grads:
        if args.clip_local:
            clip_fn = clip_grad_local
        else:
            clip_fn = clip_grad_global

    if args.clip_grads:
        model_runner.config_optimizer(optimizer,
                                      optimizer_params=lr_param,
                                      gradient_op=clip_fn,
                                      global_gradient_op=not args.clip_local)
    else:
        model_runner.config_optimizer(optimizer, optimizer_params=lr_param)

    # ======================================================================================
    # EVALUATION
    # ======================================================================================

    def eval_model(runner,
                   dataset_it,
                   len_dataset=None,
                   display_progress=False):
        if display_progress:
            pb = tqdm(total=len_dataset, ncols=60, position=1)
        batches_processed = 0
        sum_loss = 0
        for batch in dataset_it:
            batch = np.array(batch, dtype=np.int64)
            ctx = batch[:, :-1]
            target = batch[:, -1:]

            mean_loss = runner.eval(ctx, target)
            sum_loss += mean_loss

            if display_progress:
                pb.update(args.batch_size)
            batches_processed += 1

        if display_progress:
            pb.close()

        return np.exp(sum_loss / batches_processed)

    def evaluation(runner: tx.ModelRunner,
                   progress_bar,
                   cur_epoch,
                   step,
                   display_progress=False):

        ppl_validation = eval_model(
            runner,
            corpus_pipeline(corpus.validation_set(), epochs=1, shuffle=False),
            validation_len, display_progress)
        res_row = {
            "id": args.id,
            "run": args.run,
            "epoch": cur_epoch,
            "step": step,
            "lr": lr_param.value,
            "dataset": "validation",
            "perplexity": ppl_validation
        }
        ppl_writer.writerow(res_row)

        if args.eval_test:
            # pb.write("[Eval Test Set]")

            ppl_test = eval_model(
                runner,
                corpus_pipeline(corpus.test_set(), epochs=1, shuffle=False),
                test_len, display_progress)

            res_row = {
                "id": args.id,
                "run": args.run,
                "epoch": cur_epoch,
                "step": step,
                "lr": lr_param.value,
                "dataset": "test",
                "perplexity": ppl_test
            }
            ppl_writer.writerow(res_row)

        ppl_file.flush()

        if args.eval_test:
            progress_bar.set_postfix({"test PPL ": ppl_test})

        # pb.write("valid. ppl = {}".format(ppl_validation))
        return ppl_validation

    # ======================================================================================
    # TRAINING LOOP
    # ======================================================================================
    # print("Starting TensorFlow Session")

    # preparing evaluation steps
    # I use ceil because I make sure we have padded batches at the end

    epoch_step = 0
    global_step = 0
    current_epoch = 0
    patience = 0

    cfg = tf.ConfigProto()
    cfg.gpu_options.allow_growth = True
    sess = tf.Session(config=cfg)
    model_runner.set_session(sess)
    model_runner.init_vars()

    progress = tqdm(total=training_len * args.epochs,
                    position=args.pid + 1,
                    disable=not args.display_progress)
    training_data = corpus_pipeline(corpus.training_set(),
                                    batch_size=args.batch_size,
                                    epochs=args.epochs,
                                    shuffle=args.shuffle)

    evaluations = []

    try:

        for ngram_batch in training_data:
            epoch = progress.n // training_len + 1
            # Start New Epoch
            if epoch != current_epoch:
                current_epoch = epoch
                epoch_step = 0
                if args.display_progress:
                    progress.set_postfix({"epoch": current_epoch})

            # ================================================
            # EVALUATION
            # ================================================
            if epoch_step == 0:
                current_eval = evaluation(model_runner,
                                          progress,
                                          epoch,
                                          global_step,
                                          display_progress=args.eval_progress)

                evaluations.append(current_eval)
                lr_param.update(current_eval)
                # print(lr_param.eval_history)
                # print("improvement ", lr_param.eval_improvement())

                if global_step > 0:
                    if args.early_stop and epoch > 1:
                        if lr_param.eval_improvement(
                        ) < lr_param.improvement_threshold:
                            if patience >= 3:
                                break
                            patience += 1
                        else:
                            patience = 0

            # ================================================
            # TRAIN MODEL
            # ================================================
            ngram_batch = np.array(ngram_batch, dtype=np.int64)
            ctx_ids = ngram_batch[:, :-1]
            word_ids = ngram_batch[:, -1:]

            model_runner.train(ctx_ids, word_ids)
            progress.update(args.batch_size)

            epoch_step += 1
            global_step += 1

        # if not early stop, evaluate last state of the model
        if not args.early_stop or patience < 3:
            current_eval = evaluation(model_runner, progress, epoch,
                                      epoch_step)
            evaluations.append(current_eval)
        ppl_file.close()

        if args.save_model:
            model_runner.save_model(model_name=model_path,
                                    step=global_step,
                                    write_state=False)

        model_runner.close_session()
        progress.close()
        tf.reset_default_graph()

        # return the best validation evaluation
        return min(evaluations)

    except Exception as e:
        traceback.print_exc()
        os.remove(ppl_file.name)
        os.remove(param_file.name)
        raise e
Exemple #9
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# n_rows = len(corpus_dataset)

# ======================================================================================
# Load Vocabulary
# ======================================================================================
if args.lemmas:
    vocab_file = data_dir + "bnc_vocab_lemma.hdf5"
else:
    vocab_file = data_dir + "bnc_vocab.hdf5"

vocab_hdf5 = h5py.File(vocab_file, 'r')

ri_gen = Generator(dim=k, num_active=s)
print("Loading Vocabulary...")
index = TrieSignIndex(ri_gen,
                      list(vocab_hdf5["vocabulary"][:]),
                      pregen_indexes=False)

if subsampling:
    freq = TrieSignIndex.map_frequencies(list(vocab_hdf5["vocabulary"][:]),
                                         list(vocab_hdf5["frequencies"][:]),
                                         index)

    total_freq = np.sum(vocab_hdf5["frequencies"])

print("done")

# ======================================================================================
# Neural Random Projections Model
# ======================================================================================
Exemple #10
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print("vocab loaded")
print(t1 - t0)

top10w = list(vocabulary[0:10])
top10f = list(frequencies[0:10])
top10ids = [trie.get(top10w[i]) for i in range(10)]
top10w_trie = [trie.restore_key(i) for i in top10ids]

print(top10w)
print(top10f)
print(top10w_trie)

ri_gen = Generator(dim=1000, num_active=10)

t0 = time.time()
sign_index = TrieSignIndex(ri_gen, list(vocabulary[:]))
t1 = time.time()
print(t1 - t0)

print(top10ids)
top10w_index = [sign_index.get_sign(i) for i in top10ids]
print(top10w_index)

#test load top ten
print("=============================================")
index = TrieSignIndex(generator=ri_gen, vocabulary=top10w)
print(top10w)
top10ids = [index.get_id(w) for w in top10w]
print(top10ids)
freq = TrieSignIndex.map_frequencies(top10w, top10f, index)
top10freq = [freq[i] for i in top10ids]
Exemple #11
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    result = pool.map(func=text_to_ri, iterable=args)
    pool.close()


if __name__ == '__main__':
    # model parameters
    max_sentences = 10000

    # corpus and output assets
    home = os.getenv("HOME")
    corpus_file = home + "/data/gold_standards/wacky_1M.hdf5"
    output_vectors = home + "/data/results/wacky_ri_1M.hdf5"

    # load sign index
    print("loading vocabulary")
    vocab_file = home + "/data/results/wacky_vocab_1M.hdf5"
    h5v = h5py.File(vocab_file, 'r')
    vocabulary = h5v["vocabulary"]
    frequencies = h5v["frequencies"]

    ri_gen = Generator(dim=1000, num_active=10)
    sign_index = TrieSignIndex(generator=ri_gen,
                               vocabulary=list(vocabulary[()]),
                               pregen_indexes=True)

    print("done")

    # index_filename = None
    parallel_ri(corpus_file, max_sentences, window_size=3, n_processes=16)
from deepsign.rp.index import TrieSignIndex as Index
from deepsign.data.corpora.toefl import TOEFLReader
import seaborn as sns

# model dir
home = os.getenv("HOME")
data_dir = home + "/data/gold_standards/"
result_dir = home + "/data/results/"
model_dir = result_dir + "nrp/300d_reg_embeddings/"
model_file = model_dir + "model_bnc"
embeddings_file = model_dir + "embeddings.npy"
index_file = model_dir + "index.hdf5"

# load index
print("loading word index")
index = Index.load(index_file)
print(len(index))

# load toefl
questions_file = data_dir + "toefl/questions.csv"
answers_file = data_dir + "toefl/answers.csv"

toefl = TOEFLReader(questions_file=questions_file, answers_file=answers_file)

# words in toelf and not in index
toefl_remove = set(w for w in toefl.words if not index.contains(w))
for (i, question) in enumerate(toefl.questions):
    qw = question[0]
    aw = question[1]
    # print(question)
    answer = toefl.answer(i)
Exemple #13
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    def test_nce_nrp(self):
        vocab_size = 1000
        k = 500
        s = 8
        embed_size = 128
        nce_samples = 10
        noise_ratio = 0.1
        use_nce = True

        vocab = [str(i) for i in range(vocab_size)]

        generator = Generator(k, s)
        sign_index = TrieSignIndex(generator,
                                   vocabulary=vocab,
                                   pregen_indexes=True)
        ris = [
            sign_index.get_ri(sign_index.get_sign(i))
            for i in range(len(sign_index))
        ]
        # ris = [generator.generate() for _ in range(vocab_size)]

        ri_tensor = ris_to_sp_tensor_value(ri_seq=ris,
                                           dim=k,
                                           all_positive=False)

        ri_tensor_input = tx.SparseInput(n_units=k, value=ri_tensor)

        if use_nce:
            label_inputs = tx.SparseInput(k, name="target_random_indices")
        else:
            label_inputs = [
                tx.Input(1, dtype=tf.int64, name="ids"),
                tx.InputParam(dtype=tf.int32,
                              value=vocab_size,
                              name="vocab_size")
            ]

        eval_label_inputs = [
            tx.Input(1, dtype=tf.int64, name="ids_eval"),
            tx.InputParam(dtype=tf.int32, value=vocab_size, name="vocab_size")
        ]

        model = NRP(
            run_inputs=tx.SparseInput(n_units=k, name="random_index_inputs"),
            label_inputs=label_inputs,
            eval_label_input=eval_label_inputs,
            ctx_size=2,
            # vocab_size=vocab_size,
            k_dim=k,
            ri_tensor_input=ri_tensor_input,  # current dictionary state
            embed_dim=embed_size,
            h_dim=128,
            num_h=1,
            h_activation=tx.relu,
            use_dropout=True,
            embed_dropout=True,
            keep_prob=0.70,
            use_nce=use_nce,
            nce_samples=nce_samples,
            nce_noise_amount=noise_ratio,
            noise_input=tx.SparseInput(k, name="noise"))

        tf.summary.histogram("embeddings", model.embeddings.weights)
        for h in model.h_layers:
            tf.summary.histogram("h", h.linear.weights)

        # model.eval_tensors.append(model.train_loss_tensors[0])
        runner = tx.ModelRunner(model)
        runner.set_log_dir("/tmp")
        runner.log_graph()

        options = tf.RunOptions(trace_level=tf.RunOptions.FULL_TRACE)
        # options = None
        runner.set_session(runtime_stats=True, run_options=options)

        # options = tf.RunOptions(trace_level=tf.RunOptions.FULL_TRACE)

        # runner.config_optimizer(tf.train.GradientDescentOptimizer(learning_rate=0.005))#,
        # SGD with 0.025

        # lr = tx.InputParam(init_value=0.0002)
        lr = tx.InputParam(value=0.025)
        # runner.config_optimizer(tf.train.AdamOptimizer(learning_rate=lr.tensor, beta1=0.9), params=lr,
        runner.config_optimizer(
            tf.train.GradientDescentOptimizer(learning_rate=lr.tensor),
            optimizer_params=lr,
            global_gradient_op=False,
            # gradient_op=lambda grad: tf.clip_by_global_norm(grad, 10.0)[0])
            gradient_op=lambda grad: tf.clip_by_norm(grad, 1.0))

        data = np.array([[0, 2], [5, 7], [9, 8], [3, 4], [1, 9], [12, 8]])
        labels = np.array([[32], [56], [12], [2], [5], [23]])

        ppl_curve = []
        n = 256
        batch_size = 128

        dataset = np.column_stack((data, labels))
        # print(dataset)
        dataset = views.repeat_it([dataset], n)
        dataset = views.flatten_it(dataset)
        # shuffle 5 at a time
        dataset = views.shuffle_it(dataset, 6)
        dataset = views.batch_it(dataset, batch_size)

        # print(np.array(list(dataset)))
        # d = list(views.take_it(1, views.shuffle_it(d, 4)))[0]

        data_stream = dataset

        for data_stream in tqdm(data_stream, total=n * 5 / batch_size):
            sample = np.array(data_stream)

            ctx = sample[:, :-1]
            ctx.flatten()
            ctx = ctx.flatten()
            ctx_ris = [sign_index.get_ri(sign_index.get_sign(i)) for i in ctx]
            ctx_ris = ris_to_sp_tensor_value(
                ctx_ris,
                dim=sign_index.feature_dim(),
                all_positive=not sign_index.generator.symmetric)
            lbl_ids = sample[:, -1:]
            lbl = lbl_ids.flatten()

            if use_nce:
                lbl_ris = [
                    sign_index.get_ri(sign_index.get_sign(i)) for i in lbl
                ]
                lbl_ris = ris_to_sp_tensor_value(
                    lbl_ris,
                    dim=sign_index.feature_dim(),
                    all_positive=not sign_index.generator.symmetric)

                noise = generate_noise(k_dim=k,
                                       batch_size=lbl_ris.dense_shape[0] *
                                       nce_samples,
                                       ratio=noise_ratio)
                runner.train(ctx_ris, [lbl_ris, noise],
                             output_loss=True,
                             write_summaries=True)
            else:
                runner.train(model_input_data=ctx_ris,
                             loss_input_data=lbl_ids,
                             output_loss=True,
                             write_summaries=True)

        runner.close_session()