def testReferenceSingleTaxonSetDataSet(self): dataset = datagen.reference_single_taxonset_dataset() self.assertEqual(len(dataset.taxon_sets), 1) self.assertEqual(len(dataset.taxon_sets[0]), 33) self.assertEqual(len(dataset.tree_lists), 1) self.assertIs(dataset.tree_lists[0].taxon_set, dataset.taxon_sets[0]) self.assertEqual(len(dataset.char_matrices), 2) self.assertIs(dataset.char_matrices[0].taxon_set, dataset.taxon_sets[0]) self.assertIs(dataset.char_matrices[1].taxon_set, dataset.taxon_sets[0])
def testReferenceSingleTaxonSetDataSet(self): dataset = datagen.reference_single_taxonset_dataset() self.assertEqual(len(dataset.taxon_sets), 1) self.assertEqual(len(dataset.taxon_sets[0]), 33) self.assertEqual(len(dataset.tree_lists), 1) self.assertIs(dataset.tree_lists[0].taxon_set, dataset.taxon_sets[0]) self.assertEqual(len(dataset.char_matrices), 2) self.assertIs(dataset.char_matrices[0].taxon_set, dataset.taxon_sets[0]) self.assertIs(dataset.char_matrices[1].taxon_set, dataset.taxon_sets[0])
def setUp(self): self.reference_dataset = datagen.reference_single_taxonset_dataset() self.data_path = pathmap.named_output_path("char_read.nex") self.reference_dataset.write_to_path(self.data_path, "nexus")
def testRoundTripReference(self): reference_dataset = datagen.reference_single_taxonset_dataset() self.roundTripDataSetTest(reference_dataset, "nexus")
def testRoundTripReference(self): reference_dataset = datagen.reference_single_taxonset_dataset() self.roundTripDataSetTest(reference_dataset, "nexml", ignore_taxon_order=True, ignore_chartypes=True)
def testRoundTripReference(self): reference_dataset = datagen.reference_single_taxonset_dataset() self.roundTripDataSetTest(reference_dataset, "nexml", ignore_taxon_order=True)
def setUp(self): self.reference_dataset = datagen.reference_single_taxonset_dataset() self.data_path = pathmap.named_output_path("char_read.nex") self.reference_dataset.write_to_path(self.data_path, "nexus")
def setUp(self): self.dataset = datagen.reference_single_taxonset_dataset()
def setUp(self): self.dataset = datagen.reference_single_taxonset_dataset()
def testRoundTripReference(self): reference_dataset = datagen.reference_single_taxonset_dataset() self.roundTripDataSetTest(reference_dataset, "nexus")