class EvidenceTestCase(unittest.TestCase):
def setUp(self):
"""
Because _process_evidence_view uses
self.rawdir to find the evidence file,
the defaults are overriden here to
point to our test file
Note the file name must match what is in
that method - evidence_view
"""
self.test_util = TestUtils()
self.mgi = MGI('rdf_graph', True)
self.mgi.rawdir = os.path.join(os.path.dirname(__file__),
'resources/mgi')
self.mgi.idhash['annot']['6901981'] = ':association'
def tearDown(self):
self.mgi = None
return
def test_sex_specificity_model(self):
self.mgi.graph = RDFGraph(True) # Reset graph
self.mgi._process_evidence_view(limit=None)
logger.debug("Reference graph: %s",
self.mgi.graph.serialize(format="turtle").decode("utf-8"))
expected_triples = """
:association RO:0002558 ECO:0000006 ;
dc:source J:74619 ;
:has_sex_specificity PATO:0000384 .
J:74619 a IAO:0000310 .
"""
self.assertTrue(
self.test_util.test_graph_equality(expected_triples,
self.mgi.graph))
class MGITestCase(SourceTestCase):
def setUp(self):
self.source = MGI('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
class MGITestCase(SourceTestCase):
def setUp(self):
self.source = MGI('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def tearDown(self):
self.source = None
return
def setUp(self):
"""
Because _process_evidence_view uses
self.rawdir to find the evidence file,
the defaults are overriden here to
point to our test file
Note the file name must match what is in
that method - evidence_view
"""
self.test_util = TestUtils()
self.mgi = MGI('rdf_graph', True)
self.mgi.rawdir = os.path.join(os.path.dirname(__file__),
'resources/mgi')
self.mgi.idhash['annot']['6901981'] = ':association'
def setUp(self):
"""
Because _process_evidence_view uses
self.rawdir to find the evidence file,
the defaults are overriden here to
point to our test file
Note the file name must match what is in
that method - evidence_view
"""
self.test_util = TestUtils()
self.mgi = MGI('rdf_graph', True)
self.mgi.rawdir = os.path.join(os.path.dirname(__file__), 'resources/mgi')
self.mgi.idhash['annot']['6901981'] = ':association'
class EvidenceTestCase(unittest.TestCase):
def setUp(self):
"""
Because _process_evidence_view uses
self.rawdir to find the evidence file,
the defaults are overriden here to
point to our test file
Note the file name must match what is in
that method - evidence_view
"""
self.test_util = TestUtils()
self.mgi = MGI('rdf_graph', True)
self.mgi.rawdir = os.path.join(
os.path.dirname(__file__), 'resources/mgi')
self.mgi.idhash['annot']['6901981'] = ':association'
def tearDown(self):
self.mgi = None
return
def test_sex_specificity_model(self):
self.mgi.graph = RDFGraph(True) # Reset graph
self.mgi._process_evidence_view(limit=None)
logger.debug(
"Reference graph: %s",
self.mgi.graph.serialize(format="turtle").decode("utf-8"))
expected_triples = """
:association RO:0002558 ECO:0000006 ;
dc:source J:74619 ;
:has_sex_specificity PATO:0000384 .
J:74619 a IAO:0000310 .
"""
self.assertTrue(self.test_util.test_graph_equality(
expected_triples, self.mgi.graph))
def setUp(self):
self.source = MGI()
self.source.settestonly(True)
self.source.setnobnodes(True)
self._setDirToSource()
return
def setUp(self):
self.source = MGI('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return
def setUp(self):
self.source = MGI('rdf_graph', True)
self.source.settestonly(True)
self._setDirToSource()
return