def __init__(self, **kwargs):
name = kwargs['pkc_name']
if 'include_dirs' in kwargs:
kwargs['include_dirs'] += self.get_include_dirs(name) + GLOBAL_INC
else:
kwargs['include_dirs'] = self.get_include_dirs(name) + GLOBAL_INC
kwargs['define_macros'] = GLOBAL_MACROS
if 'libraries' in kwargs:
kwargs['libraries'] += self.get_libraries(name)
else:
kwargs['libraries'] = self.get_libraries(name)
if 'library_dirs' in kwargs:
kwargs['library_dirs'] += self.get_library_dirs(name)
else:
kwargs['library_dirs'] = self.get_library_dirs(name)
if 'pygobject_pkc' in kwargs:
self.pygobject_pkc = kwargs.pop('pygobject_pkc')
if self.pygobject_pkc:
kwargs['include_dirs'] += self.get_include_dirs(self.pygobject_pkc)
kwargs['libraries'] += self.get_libraries(self.pygobject_pkc)
kwargs['library_dirs'] += self.get_library_dirs(self.pygobject_pkc)
self.name = kwargs['name']
self.pkc_name = kwargs['pkc_name']
self.pkc_version = kwargs['pkc_version']
del kwargs['pkc_name'], kwargs['pkc_version']
Extension.__init__(self, **kwargs)
def __init__(self, *args, **kwargs):
for name, default in [("extra_pyxtract_cmds", []), ("lib_type", "dynamic")]:
setattr(self, name, kwargs.get(name, default))
if name in kwargs:
del kwargs[name]
Extension.__init__(self, *args, **kwargs)
def __init__(self, *a, **kw):
self.use_mysql_flags = True
self._extra_compile_args = []
self._extra_link_args = []
self._mysql_compile_args = []
self._mysql_link_args = []
self.get_mysql_compile_args = self.get_mysql_link_args = None
Extension.__init__(self, *a, **kw)
def __init__ (
self, name, sources,
include_dirs=None,
define_macros=None,
undef_macros=None,
library_dirs=None,
libraries=None,
runtime_library_dirs=None,
extra_objects=None,
extra_compile_args=None,
extra_link_args=None,
export_symbols=None,
swig_opts=None,
depends=None,
language=None,
f2py_options=None,
module_dirs=None,
extra_f77_compile_args=None,
extra_f90_compile_args=None,):
old_Extension.__init__(
self, name, [],
include_dirs=include_dirs,
define_macros=define_macros,
undef_macros=undef_macros,
library_dirs=library_dirs,
libraries=libraries,
runtime_library_dirs=runtime_library_dirs,
extra_objects=extra_objects,
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args,
export_symbols=export_symbols)
# Avoid assert statements checking that sources contains strings:
self.sources = sources
# Python 2.4 distutils new features
self.swig_opts = swig_opts or []
# swig_opts is assumed to be a list. Here we handle the case where it
# is specified as a string instead.
if isinstance(self.swig_opts, basestring):
import warnings
msg = "swig_opts is specified as a string instead of a list"
warnings.warn(msg, SyntaxWarning)
self.swig_opts = self.swig_opts.split()
# Python 2.3 distutils new features
self.depends = depends or []
self.language = language
# numpy_distutils features
self.f2py_options = f2py_options or []
self.module_dirs = module_dirs or []
self.extra_f77_compile_args = extra_f77_compile_args or []
self.extra_f90_compile_args = extra_f90_compile_args or []
return
def __init__(self, *args, **kwargs):
Extension.__init__(self, *args, **kwargs)
self.pyrex_directives = {
'profile': 'USE_PROFILE' in environ,
'embedsignature': 'USE_EMBEDSIGNATURE' in environ}
# XXX with pip, setuptools is imported before distutils, and change
# our pyx to c, then, cythonize doesn't happen. So force again our
# sources
self.sources = args[1]
def __init__(self, **kwargs):
name = kwargs["pkc_name"]
kwargs["include_dirs"] = self.get_include_dirs(name) + GLOBAL_INC
kwargs["define_macros"] = GLOBAL_MACROS
kwargs["libraries"] = self.get_libraries(name)
kwargs["library_dirs"] = self.get_library_dirs(name)
self.pkc_name = kwargs["pkc_name"]
self.pkc_version = kwargs["pkc_version"]
del kwargs["pkc_name"], kwargs["pkc_version"]
Extension.__init__(self, **kwargs)
def get_distutils_extension(modname, pyxfilename, language_level=None):
# try:
# import hashlib
# except ImportError:
# import md5 as hashlib
# extra = "_" + hashlib.md5(open(pyxfilename).read()).hexdigest()
# modname = modname + extra
extension_mod,setup_args = handle_special_build(modname, pyxfilename)
if not extension_mod:
from distutils.extension import Extension
extension_mod = Extension(name = modname, sources=[pyxfilename])
if language_level is not None:
extension_mod.cython_directives = {'language_level': language_level}
return extension_mod,setup_args
def check_extensions_list(self, extensions):
"""Ensure that the list of extensions (presumably provided as a
command option 'extensions') is valid, i.e. it is a list of
Extension objects. We also support the old-style list of 2-tuples,
where the tuples are (ext_name, build_info), which are converted to
Extension instances here.
Raise DistutilsSetupError if the structure is invalid anywhere;
just returns otherwise.
"""
if not isinstance(extensions, list):
raise DistutilsSetupError, "'ext_modules' option must be a list of Extension instances"
for i, ext in enumerate(extensions):
if isinstance(ext, Extension):
continue
if not isinstance(ext, tuple) or len(ext) != 2:
raise DistutilsSetupError, "each element of 'ext_modules' option must be an Extension instance or 2-tuple"
ext_name, build_info = ext
log.warn("old-style (ext_name, build_info) tuple found in ext_modules for extension '%s'-- please convert to Extension instance" % ext_name)
if not (isinstance(ext_name, str) and extension_name_re.match(ext_name)):
raise DistutilsSetupError, "first element of each tuple in 'ext_modules' must be the extension name (a string)"
if not isinstance(build_info, dict):
raise DistutilsSetupError, "second element of each tuple in 'ext_modules' must be a dictionary (build info)"
ext = Extension(ext_name, build_info['sources'])
for key in ('include_dirs', 'library_dirs', 'libraries', 'extra_objects', 'extra_compile_args', 'extra_link_args'):
val = build_info.get(key)
if val is not None:
setattr(ext, key, val)
ext.runtime_library_dirs = build_info.get('rpath')
if 'def_file' in build_info:
log.warn("'def_file' element of build info dict no longer supported")
macros = build_info.get('macros')
if macros:
ext.define_macros = []
ext.undef_macros = []
for macro in macros:
if not (isinstance(macro, tuple) and len(macro) in (1, 2)):
raise DistutilsSetupError, "'macros' element of build info dict must be 1- or 2-tuple"
if len(macro) == 1:
ext.undef_macros.append(macro[0])
elif len(macro) == 2:
ext.define_macros.append(macro)
extensions[i] = ext
return
def __init__(self, *args, **kwargs):
# Small hack to only compile for x86_64 on OSX.
# Is there a better way to do this?
if platform == 'darwin':
extra_args = ['-arch', 'x86_64']
kwargs['extra_compile_args'] = extra_args + \
kwargs.get('extra_compile_args', [])
kwargs['extra_link_args'] = extra_args + \
kwargs.get('extra_link_args', [])
Extension.__init__(self, *args, **kwargs)
self.pyrex_directives = {
'profile': 'USE_PROFILE' in environ,
'embedsignature': True}
# XXX with pip, setuptools is imported before distutils, and change
# our pyx to c, then, cythonize doesn't happen. So force again our
# sources
self.sources = args[1]
def get_extensions (buildsystem, compiler):
extensions = []
compatpath = "src"
docpath = os.path.join ("src", "doc")
baseincpath = os.path.join ("src", "base")
config.config_modules.prepare_modules (buildsystem, modules, cfg, compiler)
alldefines = []
for mod in modules:
# Build the availability defines
if mod.canbuild:
for entry in mod.globaldefines:
if entry not in alldefines:
alldefines.append (entry)
# Create the extensions
for mod in modules:
if not mod.canbuild:
print ("Skipping module '%s'" % mod.name)
continue
ext = Extension ("pygame2." + mod.name, sources=mod.sources)
ext.define_macros.append (("PYGAME_INTERNAL", None))
for entry in alldefines:
ext.define_macros.append (entry)
ext.extra_compile_args = mod.cflags
ext.extra_link_args = mod.lflags
ext.include_dirs = mod.incdirs + [ baseincpath, compatpath, docpath ]
ext.library_dirs = mod.libdirs
ext.libraries = mod.libs
ext.basemodule = mod
extensions.append (ext)
return extensions
def get_distutils_extension(modname, pyxfilename, language_level=None):
# try:
# import hashlib
# except ImportError:
# import md5 as hashlib
# extra = "_" + hashlib.md5(open(pyxfilename).read()).hexdigest()
# modname = modname + extra
extension_mod,setup_args = handle_special_build(modname, pyxfilename)
if not extension_mod:
if not isinstance(pyxfilename, str):
# distutils is stupid in Py2 and requires exactly 'str'
# => encode accidentally coerced unicode strings back to str
pyxfilename = pyxfilename.encode(sys.getfilesystemencoding())
from distutils.extension import Extension
extension_mod = Extension(name = modname, sources=[pyxfilename])
if language_level is not None:
extension_mod.cython_directives = {'language_level': language_level}
return extension_mod,setup_args
def __init__ (self, name, sources,
include_dirs=None,
define_macros=None,
undef_macros=None,
library_dirs=None,
libraries=None,
runtime_library_dirs=None,
extra_objects=None,
extra_compile_args=None,
extra_link_args=None,
export_symbols=None,
swig_opts=None,
depends=None,
language=None,
f2py_options=None,
module_dirs=None,
optional=False
):
old_Extension.__init__(self,name, [],
include_dirs,
define_macros,
undef_macros,
library_dirs,
libraries,
runtime_library_dirs,
extra_objects,
extra_compile_args,
extra_link_args,
export_symbols)
# Avoid assert statements checking that sources contains strings:
self.sources = sources
# Python 2.4 distutils new features
self.swig_opts = swig_opts or []
# Python 2.3 distutils new features
self.depends = depends or []
self.language = language
# numpy_distutils features
self.f2py_options = f2py_options or []
self.module_dirs = module_dirs or []
return
def __init__(self, name, *args, **kwargs):
kwargs["include_dirs"] = ([apr_includedir, apu_includedir] + svn_includedirs +
["subvertpy"])
kwargs["library_dirs"] = svn_libdirs
# Note that the apr-util link flags are not included here, as
# subvertpy only uses some apr util constants but does not use
# the library directly.
kwargs["extra_link_args"] = apr_link_flags + svn_link_flags
if os.name == 'nt':
# on windows, just ignore and overwrite the libraries!
kwargs["libraries"] = extra_libs
# APR needs WIN32 defined.
kwargs["define_macros"] = [("WIN32", None)]
if sys.platform == 'darwin':
# on Mac OS X, we need to check for Keychain availability
if is_keychain_provider_available():
if "define_macros" not in kwargs:
kwargs["define_macros"] = []
kwargs["define_macros"].extend((
('DARWIN', None),
('SVN_KEYCHAIN_PROVIDER_AVAILABLE', '1'))
)
Extension.__init__(self, name, *args, **kwargs)
elif (sys.platform == 'openbsd5'):
macros.append(('__OPENBSD__','1'))
os.environ["CC"] = "eg++"
elif (sys.platform == 'darwin'):
macros.append(('__DARWIN__','1'))
os.environ["CC"] = "g++"
else:
os.environ["CC"] = "g++"
os.environ["CXX"] = "g++"
return includes,macros
aiengine_module = Extension("pyaiengine",
sources = src_files,
libraries = ["boost_system","boost_python","pcap","pcre","boost_iostreams"],
# define_macros = [('__OPENBSD__','1'),('PYTHON_BINDING','1'),('HAVE_LIBPCRE','1')],
# define_macros = [('PYTHON_BINDING','1'),('HAVE_LIBPCRE','1')],
extra_compile_args = ["-O3","-Wreorder","-std=c++11","-lpthread","-lstdc++"],
)
if __name__ == "__main__":
includes,macros = setup_compiler()
print("Compiling aiengine extension for %s" % sys.platform)
print("\tOS name %s" % (os.name))
print("\tArchitecture %s" % os.uname()[4])
aiengine_module.include_dirs = includes
aiengine_module.define_macros = macros
from setuptools import setup, find_namespace_packages
from distutils.extension import Extension
from Cython.Build import cythonize
setup(name='cyADS1256',
version='0.3.0',
package_dir={"": "src"},
dependencies=["cython"],
install_requires=["asgiref"],
packages=find_namespace_packages(where="src"),
ext_modules=cythonize([
Extension("_bcm2835", ["src/cyads1256/_bcm2835.pyx"],
libraries=['bcm2835', 'cap'])
]))
# ext_args['extra_compile_args'].append('/openmp')
# include_dirs=[pcl_root + '\\include\\pcl' + pcl_version, pcl_root + '\\3rdParty\\Eigen\\include', pcl_root + '\\3rdParty\\Boost\\include', pcl_root + '\\3rdParty\\FLANN\include', 'C:\\Anaconda2\\envs\\my_env\\Lib\\site-packages\\numpy\\core\\include'],
# library_dirs=[pcl_root + '\\lib', pcl_root + '\\3rdParty\\Boost\\lib', pcl_root + '\\3rdParty\\FLANN\\lib'],
# libraries=["pcl_apps_debug", "pcl_common_debug", "pcl_features_debug", "pcl_filters_debug", "pcl_io_debug", "pcl_io_ply_debug", "pcl_kdtree_debug", "pcl_keypoints_debug", "pcl_octree_debug", "pcl_registration_debug", "pcl_sample_consensus_debug", "pcl_segmentation_debug", "pcl_search_debug", "pcl_surface_debug", "pcl_tracking_debug", "pcl_visualization_debug", "flann-gd", "flann_s-gd", "boost_chrono-vc100-mt-1_49", "boost_date_time-vc100-mt-1_49", "boost_filesystem-vc100-mt-1_49", "boost_graph-vc100-mt-1_49", "boost_graph_parallel-vc100-mt-1_49", "boost_iostreams-vc100-mt-1_49", "boost_locale-vc100-mt-1_49", "boost_math_c99-vc100-mt-1_49", "boost_math_c99f-vc100-mt-1_49", "boost_math_tr1-vc100-mt-1_49", "boost_math_tr1f-vc100-mt-1_49", "boost_mpi-vc100-mt-1_49", "boost_prg_exec_monitor-vc100-mt-1_49", "boost_program_options-vc100-mt-1_49", "boost_random-vc100-mt-1_49", "boost_regex-vc100-mt-1_49", "boost_serialization-vc100-mt-1_49", "boost_signals-vc100-mt-1_49", "boost_system-vc100-mt-1_49", "boost_thread-vc100-mt-1_49", "boost_timer-vc100-mt-1_49", "boost_unit_test_framework-vc100-mt-1_49", "boost_wave-vc100-mt-1_49", "boost_wserialization-vc100-mt-1_49", "libboost_chrono-vc100-mt-1_49", "libboost_date_time-vc100-mt-1_49", "libboost_filesystem-vc100-mt-1_49", "libboost_graph_parallel-vc100-mt-1_49", "libboost_iostreams-vc100-mt-1_49", "libboost_locale-vc100-mt-1_49", "libboost_math_c99-vc100-mt-1_49", "libboost_math_c99f-vc100-mt-1_49", "libboost_math_tr1-vc100-mt-1_49", "libboost_math_tr1f-vc100-mt-1_49", "libboost_mpi-vc100-mt-1_49", "libboost_prg_exec_monitor-vc100-mt-1_49", "libboost_program_options-vc100-mt-1_49", "libboost_random-vc100-mt-1_49", "libboost_regex-vc100-mt-1_49", "libboost_serialization-vc100-mt-1_49", "libboost_signals-vc100-mt-1_49", "libboost_system-vc100-mt-1_49", "libboost_test_exec_monitor-vc100-mt-1_49", "libboost_thread-vc100-mt-1_49", "libboost_timer-vc100-mt-1_49", "libboost_unit_test_framework-vc100-mt-1_49", "libboost_wave-vc100-mt-1_49", "libboost_wserialization-vc100-mt-1_49"],
## define_macros=[('BOOST_NO_EXCEPTIONS', 'None')],
# define_macros=[('EIGEN_YES_I_KNOW_SPARSE_MODULE_IS_NOT_STABLE_YET', '1')],
# extra_compile_args=["/EHsc"],
print(ext_args)
if pcl_version == '-1.6':
module = [
Extension(
"pcl._pcl",
["pcl/_pcl.pyx", "pcl/minipcl.cpp", "pcl/ProjectInliers.cpp"],
language="c++",
**ext_args),
Extension("pcl.pcl_visualization", ["pcl/pcl_visualization.pyx"],
language="c++",
**ext_args),
# Extension("pcl.pcl_grabber", ["pcl/pcl_grabber.pyx", "pcl/grabber_callback.cpp"], language="c++", **ext_args),
# debug
# gdb_debug=True,
]
elif pcl_version == '-1.7':
module = [
Extension("pcl._pcl", [
"pcl/_pcl_172.pyx", "pcl/minipcl.cpp", "pcl/ProjectInliers.cpp"
],
language="c++",
self.compiler_so = default_compiler_so
# inject our redefined _compile method into the class
self._compile = _compile
# run the customize_compiler
class custom_build_ext(build_ext):
def build_extensions(self):
customize_compiler_for_nvcc(self.compiler)
build_ext.build_extensions(self)
ext_modules = [
Extension("utils.cython_bbox", ["utils/bbox.pyx"],
extra_compile_args={'gcc': ["-Wno-cpp", "-Wno-unused-function"]},
include_dirs=[numpy_include]),
Extension("utils.cython_nms", ["utils/nms.pyx"],
extra_compile_args={'gcc': ["-Wno-cpp", "-Wno-unused-function"]},
include_dirs=[numpy_include]),
Extension("nms.cpu_nms", ["nms/cpu_nms.pyx"],
extra_compile_args={'gcc': ["-Wno-cpp", "-Wno-unused-function"]},
include_dirs=[numpy_include]),
Extension(
'nms.gpu_nms',
['nms/nms_kernel.cu', 'nms/gpu_nms.pyx'],
library_dirs=[CUDA['lib64']],
libraries=['cudart'],
language='c++',
runtime_library_dirs=[CUDA['lib64']],
# this syntax is specific to this build system
# Compile command: python setup.py build_ext --inplace --compiler=mingw32
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy
setup(cmdclass={'build_ext': build_ext},
ext_modules=[Extension("QuadTree", ["QuadTree.pyx"])],
include_dirs=[numpy.get_include()])
print("""
############
# Success! #
############""")
from distutils.core import setup
from distutils.extension import Extension
import os.path
import sys
files = ["neuroPython.cpp", "command.cpp" ,"instruction.cpp", "stdOdeIntegrator.cpp","lyapunov.cpp", "fullNetwork.cpp", "generatedNodes.cpp", "globals.cpp", "sdeNode.cpp", "stdSdeIntegrator.cpp","odeNode.cpp", "gslOdeNode.cpp" ,"ioNode.cpp" ,"pulseCoupledPhaseOscillator.cpp","pulseCoupledExcitatoryNeuron.cpp" ,"network.cpp" ,"dynNetwork.cpp" ,"createNetwork.cpp", "spatialNetwork.cpp","mapNode.cpp" ,"eventHandler.cpp" ,"node.cpp" ,"priorityQueue.cpp", "dynNode.cpp" ,"gslNoise.cpp" ,"statisticsNetwork.cpp" ,"commandLineArguments.cpp" ]
if sys.platform == "win32" :
include_dirs = ["C:\\Program Files (x86)\\boost\\boost_1_46_1"]
libraries=["gsl", "cblas"]
library_dirs=['C:\\Program Files (x86)\\boost\\boost_1_46_1\\lib']
module = Extension("conedy", files, library_dirs=library_dirs,
libraries=libraries,
include_dirs=include_dirs,
depends=[])
module.extra_compile_args = ['/GX']
else :
include_dirs = ["/usr/include/boost","."]
libraries=["boost_python","gsl", "gslcblas", "boost_iostreams", "z"]
library_dirs=['/usr//lib']
module = Extension("conedy", files, library_dirs=library_dirs,
libraries=libraries,
include_dirs=include_dirs,
depends=[])
)
extensions = []
for name, data in ext_data.items():
sources = [srcpath(data['pyxfile'], suffix=suffix, subdir='')]
pxds = [pxd(x) for x in data.get('pxdfiles', [])]
if suffix == '.pyx' and pxds:
sources.extend(pxds)
sources.extend(data.get('sources', []))
include = data.get('include', common_include)
obj = Extension('pandas.%s' % name,
sources=sources,
depends=data.get('depends', []),
include_dirs=include)
extensions.append(obj)
sparse_ext = Extension('pandas._sparse',
sources=[srcpath('sparse', suffix=suffix)],
include_dirs=[],
libraries=libraries)
parser_ext = Extension('pandas._parser',
depends=[
'pandas/src/parser/tokenizer.h',
'pandas/src/parser/io.h',
'pandas/src/numpy_helper.h'
],
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
ext_modules = [Extension("aliaser", ["aliaser.py"])]
setup(name='Xplex', cmdclass={'build_ext': build_ext}, ext_modules=ext_modules)
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
__version__ = '0.2.6'
setup(name="mdb",
version=__version__,
description='Python client of MDB-Lightning',
cmdclass={'build_ext': build_ext},
author='Chango Inc.',
keywords=['mdb-ligtning', 'mdb', 'lmdb', 'key-value store'],
license='MIT',
ext_modules=[
Extension("mdb", [
"db.pyx",
],
libraries=["lmdb"],
library_dirs=["/usr/local/lib"],
include_dirs=["/usr/local/include"],
runtime_library_dirs=["/usr/local/lib"])
])
("hdf5interface", ["petsc"]), ("mgimpl", ["petsc"]),
("patchimpl", ["petsc"]), ("spatialindex", ["spatialindex_c"]),
("supermeshimpl", ["supermesh", "petsc"])]
petsc_dirs = get_petsc_dir()
include_dirs = [np.get_include(), petsc4py.get_include()]
include_dirs += ["%s/include" % d for d in petsc_dirs]
dirs = (sys.prefix, *petsc_dirs)
link_args = ["-L%s/lib" % d
for d in dirs] + ["-Wl,-rpath,%s/lib" % d for d in dirs]
extensions = [
Extension(
"firedrake.cython.{}".format(ext),
sources=[os.path.join("firedrake", "cython", "{}.pyx".format(ext))],
include_dirs=include_dirs,
libraries=libs,
extra_link_args=link_args) for (ext, libs) in cythonfiles
]
if 'CC' not in env:
env['CC'] = "mpicc"
setup(name='firedrake',
version=versioneer.get_version(),
cmdclass=cmdclass,
description="""Firedrake is an automated system for the portable solution
of partial differential equations using the finite element method
(FEM)""",
author="Imperial College London and others",
author_email="*****@*****.**",
url="http://firedrakeproject.org",
sourcefiles = [
os.path.join(project_path,'api','beeview.pyx'),
os.path.join(project_path,'api','beeview_api.cpp'),
os.path.join(project_path,'src','bee_eye.cpp'),
os.path.join(project_path,'src','camera.cpp'),
os.path.join(project_path,'src','image.cpp'),
os.path.join(project_path,'src','obj_loader.cpp'),
os.path.join(project_path,'src','renderer.cpp'),
os.path.join(project_path,'src','sampler.cpp'),
os.path.join(project_path,'src','scene.cpp'),
os.path.join(project_path,'src','stdafx.cpp'),
os.path.join(project_path,'src','texture.cpp')
]
ext=[Extension('beeview',
sources = sourcefiles,
libraries=["embree"],
extra_link_args=["/LIBPATH:"+ os.path.join(project_path,'lib')], # for linux -L
extra_compile_args=["-I" + os.path.join(project_path,'external')],
define_macros=[('_ENABLE_EXTENDED_ALIGNED_STORAGE', null)],
language='c++')]
setup(
name = 'beeview',
version = '1.0',
author = 'Johannes Polster',
url = 'https://github.com/tschopo/bee_view',
description = 'Bee Eye Camera for Virtual Environments',
ext_modules=cythonize(ext),
py_modules = ['beeview']
)
from distutils.core import setup
from distutils.extension import Extension
from Cython.Build import cythonize
extensions = Extension(
name="raw_eater",
sources=["cython/raw_eater.pyx"],
# libraries=[""],
library_dirs=["src"],
include_dirs=["src"],
language='c++',
extra_compile_args=['-std=c++11', '-Wno-unused-variable'],
extra_link_args=['-std=c++11'],
#extra_objects=["lib/parquet/libarrow.so.200.0.0"],
)
setup(name="raw_eater", ext_modules=cythonize(extensions))
#!/usr/bin/env python
from setuptools import setup, find_packages
from distutils.extension import Extension
import logging
import os
import sys
try:
from Cython.Build import cythonize
extension = cythonize(
[
Extension('psd_tools.compression._rle',
['src/psd_tools/compression/_rle.pyx'])
],
language_level=sys.version_info[0],
)
except ImportError:
logging.error('Cython not found, no extension will be built.')
extension = []
def get_version():
"""
Get package version.
"""
curdir = os.path.dirname(__file__)
filename = os.path.join(curdir, 'src', 'psd_tools', 'version.py')
with open(filename, 'r') as fp:
return fp.read().split('=')[1].strip(" \r\n'")
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
import subprocess
import sys
errno = subprocess.call([sys.executable, 'runtests.py'])
raise SystemExit(errno)
setup(
cmdclass={
'build_ext': build_ext,
'test': PyTest
},
ext_modules=[
Extension("optspace",
sources=[
"OptSpace_C/las2.c", "OptSpace_C/matops.c",
"OptSpace_C/rand.c", "OptSpace_C/svdlib.c",
"OptSpace_C/svdutil.c", "OptSpace_C/OptSpace.c",
"optspace.pyx"
],
include_dirs=["OptSpace_C"])
],
)
libs = ["ceres", boost_lib] + opencv_libraries
xtra_obj2d = []
library_dirs = [opencv_library_dir]
extensions = [
Extension(
name="pupil_detectors.detector_2d",
sources=[
"detector_2d.pyx",
"singleeyefitter/ImageProcessing/cvx.cpp",
"singleeyefitter/utils.cpp",
"singleeyefitter/detectorUtils.cpp",
],
include_dirs=include_dirs,
libraries=libs,
library_dirs=library_dirs,
extra_link_args=[], # '-WL,-R/usr/local/lib'
extra_compile_args=[
"-D_USE_MATH_DEFINES",
"-std=c++11",
"-w",
"-O2",
], # ,'-O2'], #-w hides warnings
extra_objects=xtra_obj2d,
depends=dependencies,
language="c++",
),
Extension(
name="pupil_detectors.detector_3d",
sources=[
"detector_3d.pyx",
"singleeyefitter/ImageProcessing/cvx.cpp",
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
from Cython.Build import cythonize
import numpy
ext_modules = Extension(
"*",
["mizzle/*.pyx"],
extra_compile_args = ["-O3", "-ffast-math", "-march=native", "-fopenmp" ],
extra_link_args=['-fopenmp'],
include_dirs=[numpy.get_include()],
)
setup(name='mizzle',
version='0.1',
description='Hydrates arbitrary metal-oxide surfaces',
author='Samuel Stenberg',
author_email='*****@*****.**',
license='MIT',
packages=['mizzle'],
install_requires=['argcomplete','numpy','pandas','mdtraj','tqdm', 'scipy', 'radish', 'sphinx_rtd_theme'],
scripts=['bin/mizzler'],
include_package_data=True,
cmdclass = {'build_ext': build_ext},
ext_modules = cythonize([ext_modules]),
zip_safe=False)
# Recover the gcc compiler
GCCPATH_STRING = sbp.Popen(
['gcc', '-print-libgcc-file-name'],
stdout=sbp.PIPE).communicate()[0]
GCCPATH = osp.normpath(osp.dirname(GCCPATH_STRING))
GCCPATH = str(GCCPATH, "UTF-8")
# Recover the CLASS version
with open(os.path.join('..', 'include', 'common.h'), 'r') as v_file:
for line in v_file:
if line.find("_VERSION_") != -1:
# get rid of the " and the v
VERSION = line.split()[-1][2:-1]
break
setup(
name='classy',
version=VERSION,
description='Python interface to the Cosmological Boltzmann code CLASS',
url='http://www.class-code.net',
cmdclass={'build_ext': build_ext},
ext_modules=[Extension("classy", ["classy.pyx"],
include_dirs=[nm.get_include(), "../include"],
libraries=["class"],
library_dirs=["../", GCCPATH],
extra_link_args=['-lgomp'],
)],
data_files=(('bbn', ['../bbn/sBBN.dat']),)
)
try:
from setuptools import setup # try first in case it's already there.
except ImportError:
from ez_setup import use_setuptools
use_setuptools()
from setuptools import setup
from distutils.extension import Extension
try:
from Cython.Build import cythonize
USE_CYTHON = True
extensions = cythonize('vpython/cyvector.pyx')
except ImportError:
extensions = [Extension('vpython.cyvector', ['vpython/cyvector.c'])]
import versioneer
setup(
name='vpython',
packages=['vpython'],
version=versioneer.get_version(),
cmdclass=versioneer.get_cmdclass(),
description='VPython for Jupyter Notebook',
long_description=open('README.md').read(),
author='John Coady / Ruth Chabay / Bruce Sherwood / Steve Spicklemire',
author_email='*****@*****.**',
url='http://pypi.python.org/pypi/vpython/',
license='LICENSE.txt',
keywords='vpython',
from distutils.core import setup
from distutils.extension import Extension
import platform
from Cython.Distutils import build_ext
import numpy
math_lib = ["m"]
if platform.platform()[:7] == "Windows":
math_lib = []
ext_modules = [
Extension(
name="klsyn.klatt_wrap",
sources=["klsyn/klatt_wrap.pyx"],
libraries=math_lib,
include_dirs=[numpy.get_include()],
language="c",
)
]
setup(
name='klsyn',
cmdclass={'build_ext': build_ext},
#ext_package='klatt_wrap',
ext_modules=ext_modules,
packages=['klsyn'],
scripts=[
'scripts/klattsyn.py', 'scripts/klattsyn_interactive.py',
'scripts/klp_continuum.py', 'scripts/doc2klp.py', 'scripts/wxklsyn.pyw'
],
from distutils.core import setup
from distutils.extension import Extension
import os
import sys
ext = Extension('imagetask.core', [])
ext.language = 'c++'
for dir, sub_dirs, files in os.walk( 'imagetask' ):
ext.include_dirs.append(dir)
for f in files:
if f.endswith( '.cpp' ):
ext.sources.append(os.path.join(dir,f) )
ext.include_dirs.append('.')
setup(name='imagetask',
version='0.1',
packages=['imagetask'],
ext_modules=[ext]
)
#!/usr/bin/env python
# coding=utf-8
from distutils.core import setup
from distutils.extension import Extension
from Cython.Build import cythonize
sourcefiles = ["axidma.pyx", "libaxidma/libaxidma.c", "libaxidma/libgpio.c"]
ext_modules = [
Extension("axidma",
sources=sourcefiles)]
setup(name="axidma", ext_modules=cythonize(ext_modules))
def __init__(self, *args, **kwargs):
self.glob_extra_link_args = kwargs.pop('glob_extra_link_args', [])
Extension.__init__(self, *args, **kwargs)
for ext_name in pyxfiles:
if has_cython:
ext = ".pyx"
else:
ext = ".cpp"
pyxfile = ext_name + ext
# replace "/" by "." get module
if "/" in ext_name:
ext_name = ext_name.replace("/", ".")
sources = [pyxfile]
extmod = Extension(ext_name,
sources=sources,
libraries=['cpptraj'],
language='c++',
library_dirs=[libdir, ],
include_dirs=[cpptraj_include, pytraj_home],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args)
extmod.cython_directives = {
'embedsignature': True,
'boundscheck': False,
'wraparound': False,
}
ext_modules.append(extmod)
setup_args = {}
packages = [
'pytraj',
'pytraj.utils',
#!/usr/bin/env python
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
from Cython.Build import cythonize
macros = [('PYREX_WITHOUT_ASSERTIONS', None)]
cmdclass = {}
print("Compiling with Cython")
ext_modules = [
Extension('_cbitstring', ["_cbitstring.pyx"], define_macros=macros)
]
cythonize(ext_modules)
cmdclass.update({'build_ext': build_ext})
setup(
name='bitstring',
ext_modules=ext_modules,
)
"""
compiler_args_unix = ["-O3", "-ffast-math", "-march=native"]
compiler_args_vcpp = ["/O2", "/fp:fast", "/GL"]
platform = sys.platform
if platform.startswith('win'):
compiler_args = compiler_args_vcpp
elif platform.startswith('darwin'):
compiler_args = []
else:
compiler_args = compiler_args_unix
ext_modules=[
Extension("*",
["dominance/*.pyx"],
extra_compile_args = compiler_args,
),
Extension("*",
["loader/levenshtein_wrapper.pyx"],
extra_compile_args = compiler_args,
),
Extension("*",
["loader/distance_mtr.pyx"],
extra_compile_args = compiler_args,
)
]
setup(
name = "rfd-discovery",
version = "0.0.1",
cmdclass = {"build_ext": build_ext},
except ImportError:
HAVE_CYTHON = False
def _read(fn):
path = os.path.join(os.path.dirname(__file__), fn)
return open(path).read()
# Search far and wide for the dependencies.
INC_DIRS = ['/opt/local/include', os.path.expanduser('~/.brew/include')]
ext = Extension(
"lastfp._fplib",
[
"fplib.pyx",
"fplib/src/Filter.cpp",
"fplib/src/FingerprintExtractor.cpp",
"fplib/src/OptFFT.cpp",
],
language="c++",
include_dirs=['fplib/include'] + INC_DIRS,
libraries=["stdc++", "samplerate", "fftw3f"],
)
# If we don't have Cython, build from *.cpp instead of the Cython
# source. Also, if we do have Cython, make sure we use its build
# command.
cmdclass = {}
if HAVE_CYTHON:
cmdclass['build_ext'] = build_pyx
else:
ext.sources[0] = 'fplib.cpp'
#self.rc = default_compiler_so
# inject our redefined _compile method into the class
self.compile = compile
# run the customize_compiler
class custom_build_ext(build_ext):
def build_extensions(self):
customize_compiler_for_nvcc(self.compiler)
build_ext.build_extensions(self)
ext_modules = [
Extension("model.utils.cython_bbox", ["model/utils/bbox.pyx"],
extra_compile_args={'gcc': []},
include_dirs=[numpy_include]),
Extension(
'pycocotools._mask',
sources=['pycocotools/maskApi.c', 'pycocotools/_mask.pyx'],
include_dirs=[numpy_include, 'pycocotools'],
extra_compile_args={'gcc': ['/Qstd=c99']},
),
]
setup(
name='faster_rcnn',
ext_modules=ext_modules,
# inject our custom trigger
cmdclass={'build_ext': custom_build_ext},
)
def __init__(self, name, wrap_sources, aux_sources, **kw):
Extension.__init__(self, name, wrap_sources+aux_sources, **kw)
self.module_name = self.name.split(".", 1)[-1]
self.wrap_sources = wrap_sources
#!/usr/bin/env python
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy as np
setup(
cmdclass={'build_ext': build_ext},
ext_modules=[
Extension("joint_bilateral_filter",
sources=["joint_bilateral_filter.pyx", "joint_bilateral.c"],
include_dirs=[np.get_include()])
],
)
def demo():
import joint_bilateral_filter as jbf
import matplotlib.pyplot as plt
from skimage.color import lab2rgb
from skimage.transform import resize
L = plt.imread('./demo_images/L.png')[:, :, 0]
ab = np.stack([
plt.imread('./demo_images/a.png')[::2, ::2, 0],
plt.imread('./demo_images/b.png')[::2, ::2, 0]
],
axis=0)
cmdclass={'build_ext': build_ext},
ext_modules=[
Extension(
"simpleforest",
["simpleforest.pyx"],
language="c++",
include_dirs=get_numpy_include_dirs() +
['src', '.', "/vol/medic02/users/kpk09/LOCAL/include"],
library_dirs=["/vol/medic02/users/kpk09/LOCAL/lib"],
libraries=[
'opencv_core',
'opencv_imgproc',
'opencv_features2d',
# 'opencv_gpu',
'opencv_calib3d',
'opencv_objdetect',
'opencv_video',
'opencv_highgui',
'opencv_ml',
# 'opencv_legacy',
# 'opencv_contrib',
'opencv_flann',
'tbb',
'boost_filesystem',
'boost_system',
'boost_regex'
],
extra_link_args=["-w"],
extra_compile_args=["-w"]),
Extension(
"integralforest",
from distutils.core import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import numpy
import pkgconfig
extension = [
Extension('svd3', ['src/svd3.pyx'],
language='c++',
include_dirs=[numpy.get_include()])
]
setup(ext_modules=cythonize(extension))
def c_to_dll(filename, ext = None, force_rebuild = 0,
build_in_temp=False, cbuild_dir=None, setup_args={},
reload_support=False, inplace=False):
"""Compile a C file to a DLL and return the name of the generated .so
or .dll ."""
assert os.path.exists(filename), "Could not find %s" % os.path.abspath(filename)
path, name = os.path.split(os.path.abspath(filename))
if not ext:
modname, extension = os.path.splitext(name)
assert extension in (".c", ".py"), extension
if not HAS_CYTHON:
filename = filename[:-len(extension)] + '.c'
ext = Extension(name=modname, sources=[filename])
if not cbuild_dir:
cbuild_dir = os.path.join(path, "_cbld")
package_base_dir = path
for package_name in ext.name.split('.')[-2::-1]:
package_base_dir, pname = os.path.split(package_base_dir)
if pname != package_name:
# something is wrong - package path doesn't match file path
package_base_dir = None
break
script_args=setup_args.get("script_args",[])
if DEBUG or "--verbose" in script_args:
quiet = "--verbose"
else:
quiet = "--quiet"
args = [quiet, "build_ext"]
if force_rebuild:
args.append("--force")
if inplace and package_base_dir:
args.extend(['--build-lib', package_base_dir])
if ext.name == '__init__' or ext.name.endswith('.__init__'):
# package => provide __path__ early
if not hasattr(ext, 'cython_directives'):
ext.cython_directives = {'set_initial_path' : 'SOURCEFILE'}
elif 'set_initial_path' not in ext.cython_directives:
ext.cython_directives['set_initial_path'] = 'SOURCEFILE'
if HAS_CYTHON and build_in_temp:
args.append("--pyrex-c-in-temp")
sargs = setup_args.copy()
sargs.update({
"script_name": None,
"script_args": args + script_args,
})
# late import, in case setuptools replaced it
from distutils.dist import Distribution
dist = Distribution(sargs)
if not dist.ext_modules:
dist.ext_modules = []
dist.ext_modules.append(ext)
if HAS_CYTHON:
dist.cmdclass = {'build_ext': build_ext}
build = dist.get_command_obj('build')
build.build_base = cbuild_dir
cfgfiles = dist.find_config_files()
dist.parse_config_files(cfgfiles)
try:
ok = dist.parse_command_line()
except DistutilsArgError:
raise
if DEBUG:
print("options (after parsing command line):")
dist.dump_option_dicts()
assert ok
try:
obj_build_ext = dist.get_command_obj("build_ext")
dist.run_commands()
so_path = obj_build_ext.get_outputs()[0]
if obj_build_ext.inplace:
# Python distutils get_outputs()[ returns a wrong so_path
# when --inplace ; see http://bugs.python.org/issue5977
# workaround:
so_path = os.path.join(os.path.dirname(filename),
os.path.basename(so_path))
if reload_support:
org_path = so_path
timestamp = os.path.getmtime(org_path)
global _reloads
last_timestamp, last_path, count = _reloads.get(org_path, (None,None,0) )
if last_timestamp == timestamp:
so_path = last_path
else:
basename = os.path.basename(org_path)
while count < 100:
count += 1
r_path = os.path.join(obj_build_ext.build_lib,
basename + '.reload%s'%count)
try:
import shutil # late import / reload_support is: debugging
try:
# Try to unlink first --- if the .so file
# is mmapped by another process,
# overwriting its contents corrupts the
# loaded image (on Linux) and crashes the
# other process. On Windows, unlinking an
# open file just fails.
if os.path.isfile(r_path):
os.unlink(r_path)
except OSError:
continue
shutil.copy2(org_path, r_path)
so_path = r_path
except IOError:
continue
break
else:
# used up all 100 slots
raise ImportError("reload count for %s reached maximum"%org_path)
_reloads[org_path]=(timestamp, so_path, count)
return so_path
except KeyboardInterrupt:
sys.exit(1)
except (IOError, os.error):
exc = sys.exc_info()[1]
error = grok_environment_error(exc)
if DEBUG:
sys.stderr.write(error + "\n")
raise
import distutils
distutils.log.set_verbosity(1)
import os
from distutils.sysconfig import get_config_vars
remove_flag = ['-Wstrict-prototypes']
os.environ['OPT'] = " ".join(
flag for flag in get_config_vars('OPT')[0].split() if flag not in remove_flag
)
VERSION = '0.1'
worker = Extension('worker',
define_macros = [('PYTHON', '1')],
include_dirs = ['/usr/include/cppconn', '/usr/include/boost'],
libraries = ['mysqlcppconn', 'boost_python'],
sources = ['worker.cpp', 'worker_extra.cpp'],
extra_compile_args = ['-std=c++11'])
local_libs = True
if local_libs:
worker.include_dirs = ['/home/scolvin/cppconn/include', '/home/scolvin/boost']
worker.library_dirs = ['/home/scolvin/cppconn/lib', '/home/scolvin/boost/lib']
worker.extra_compile_args = ['-std=c++0x']
setup (name = 'worker',
version = VERSION,
description = 'Performs business grunt work in c++ interacting directly with the db.',
author = 'Samuel Colvin',
author_email = '*****@*****.**',
long_description = '''
c_polypart_src = join(c_polypart_root, 'src')
c_polypart_incs = [c_polypart_src]
c_polypart_files = [join(c_polypart_src, x) for x in [
'polypartition.cpp']]
if have_cython:
pypolypart_files = [
'pypolypart/python/pypolypart.pyx'
]
cmdclass = {'build_ext': build_ext}
else:
pypolypart_files = ['pypolypart/python/pypolypart.c']
cmdclass = {}
ext = Extension('pypolypart',
pypolypart_files + c_polypart_files,
include_dirs=c_polypart_incs,
language="c++")
if environ.get('READTHEDOCS', None) == 'True':
ext.pyrex_directives = {'embedsignature': True}
setup(
name='pypolypart',
description='Cython bindings for Polygon Partition',
author='Alex Chozabu PB - refrencing cymunk',
author_email='*****@*****.**',
cmdclass=cmdclass,
ext_modules=[ext])
def platform():
map1 = {'win32':'win', 'linux2':'linux', 'linux':'linux'}
map2 = {'darwin':'ios'}
os = sys.platform
if os in map1:
return '%s%d' % (map1[os], struct.calcsize('P')*8)
return map2.get(os, os)
platform = platform()
api_dir = PREFIX+'api/%s'%platform
include_dirs = [PREFIX+'ctp', api_dir]
library_dirs = [api_dir]
ext_modules = []; package_data = []
for k,v in BUILD:
extm = Extension(name='ctp._'+k, language='c++',
include_dirs=include_dirs, library_dirs=library_dirs,
libraries=[v], sources=['ctp/%s.cpp'%k],
)
ext_modules.append(extm)
if platform.startswith('win'):
k = '%s.dll'%v
else:
extm.extra_link_args = ['-Wl,-rpath,$ORIGIN']
k = 'lib%s.so'%v
package_data.append(k)
v = 'ctp/' + k
if not os.path.exists(v):
shutil.copy2('%s/%s'%(api_dir,k), v)
setup(
name='ctp', version=__version__, author=__author__,
cmdclass={}, ext_modules=ext_modules,
def __init__(self, *args, **kwargs):
self._init_func = kwargs.pop("init_func", None)
Extension.__init__(self, *args, **kwargs)
"""distutils.command.build_ext
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
from Cython.Build import cythonize
import numpy as np
# /opt/anaconda3/bin/python3 setup.py build_ext --inplace
try:
numpy_include = np.get_include()
except AttributeError:
numpy_include = np.get_numpy_include()
ext_modules = [
Extension("cython_nms", ["cython_nms.pyx"],
extra_compile_args=["-Wno-cpp", "-Wno-unused-function"],
include_dirs=[numpy_include]),
]
setup(name='mask_rcnn',
cmdclass={"build_ext": build_ext},
ext_modules=cythonize(ext_modules))
except:
from setuptools.dist import Distribution
Distribution(dict(setup_requires=CYTHON_VERSION))
finally:
from Cython.Build import cythonize
ext_modules = cythonize([
Extension(
"DTLSSocket.dtls",
[
"DTLSSocket/dtls.pyx", "DTLSSocket/tinydtls/ccm.c",
"DTLSSocket/tinydtls/crypto.c", "DTLSSocket/tinydtls/dtls.c",
"DTLSSocket/tinydtls/dtls_debug.c",
"DTLSSocket/tinydtls/dtls_time.c", "DTLSSocket/tinydtls/hmac.c",
"DTLSSocket/tinydtls/netq.c", "DTLSSocket/tinydtls/peer.c",
"DTLSSocket/tinydtls/session.c",
"DTLSSocket/tinydtls/aes/rijndael.c",
"DTLSSocket/tinydtls/sha2/sha2.c"
],
include_dirs=['DTLSSocket/tinydtls'],
define_macros=[('DTLSv12', '1'), ('WITH_SHA256', '1'),
('DTLS_CHECK_CONTENTTYPE', '1'), ('_GNU_SOURCE', '1')],
undef_macros=["NDEBUG"],
)
])
setup(
name="DTLSSocket",
version='0.1.4',
description=
"DTLSSocket is a cython wrapper for tinydtls with a Socket like interface",
def run(self):
self.distribution.run_command('configure')
return build_ext.run(self)
cmdclass['cython'] = CythonCommand
cmdclass['build_ext'] = zbuild_ext
extensions = []
for submod, packages in submodules.items():
for pkg in sorted(packages):
sources = [pjoin('zmq', submod, pkg+suffix)]
if suffix == '.pyx':
sources.extend(packages[pkg])
ext = Extension(
'zmq.%s.%s'%(submod, pkg),
sources = sources,
include_dirs=[pjoin('zmq', sub) for sub in ('utils','core','devices')],
)
if suffix == '.pyx' and ext.sources[0].endswith('.c'):
# undo setuptools stupidly clobbering cython sources:
ext.sources = sources
extensions.append(ext)
if 'PyPy' in sys.version:
extensions = []
package_data = {'zmq':['*.pxd'],
'zmq.core':['*.pxd'],
'zmq.devices':['*.pxd'],
'zmq.utils':['*.pxd', '*.h'],
}
__author__ = 'quentin'
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy
setup(
cmdclass = {'build_ext': build_ext},
ext_modules = [ Extension("cpython_proto", ["cpython_proto.pyx"],
include_dirs=[numpy.get_include()])]
)
class custom_build_ext(build_ext):
def build_extensions(self):
customize_compiler_for_nvcc(self.compiler)
build_ext.build_extensions(self)
ext_modules = [
Extension(
'gpu_nms',
['nms_kernel.cu', 'gpu_nms.pyx'],
library_dirs=[CUDA['lib64']],
libraries=['cudart'],
language='c++',
runtime_library_dirs=[CUDA['lib64']],
# this syntax is specific to this build system
# we're only going to use certain compiler args with nvcc and not with
# gcc the implementation of this trick is in customize_compiler() below
extra_compile_args={
'gcc': ["-Wno-unused-function"],
'nvcc': [
'-arch=sm_35', '--ptxas-options=-v', '-c',
'--compiler-options', "'-fPIC'"
]
},
include_dirs=[numpy_include, CUDA['include']]),
Extension("soft_cpu_nms", ["soft_cpu_nms.pyx"],
extra_compile_args={'gcc': ["-Wno-cpp", "-Wno-unused-function"]},
include_dirs=[numpy_include]),
Extension("cpu_nms_cython", ["cpu_nms_cython.pyx"],
extra_compile_args={'gcc': ["-Wno-cpp", "-Wno-unused-function"]},
include_dirs=[numpy_include]),
]
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy
setup(name="CPWOPTcritical",
cmdclass={"build_ext": build_ext},
ext_modules=[
Extension("CPWOPTcritical", ["CPWOPTcritical.pyx"],
include_dirs=[numpy.get_numpy_include()])
])
files = ["neuroPython.cpp", "neuroPythonNodes.cpp", "command.cpp" ,"instruction.cpp", "stdOdeIntegrator.cpp","lyapunov.cpp", "fullNetworkWithNodes.cpp", "generatedNodes.cpp", "globals.cpp", "sdeNode.cpp", "stdSdeIntegrator.cpp","odeNode.cpp", "gslOdeNode.cpp" ,"ioNode.cpp" ,"pulseCoupledPhaseOscillator.cpp","network.cpp" ,"dynNetwork.cpp" ,"createNetwork.cpp", "spatialNetwork.cpp","mapNode.cpp" ,"eventHandler.cpp" ,"node.cpp" ,"priorityQueue.cpp", "dynNode.cpp" ,"gslNoise.cpp" ,"statisticsNetwork.cpp" ,"commandLineArguments.cpp", "params.cpp" ]
if sys.platform == "win32" :
include_dirs = ["C:\\Program Files (x86)\\boost\\boost_1_46_1"]
libraries=["gsl", "gslcblas"]
library_dirs=['C:\\Program Files (x86)\\boost\\boost_1_46_1\\lib']
module = Extension("conedy", files, library_dirs=library_dirs,
libraries=libraries,
include_dirs=include_dirs,
depends=[])
module.extra_compile_args = ['/GX', '-DPYTHON', '-DSVN_REV=0.262']
else :
include_dirs = ["/usr/include/boost","."]
libraries=["boost_python","gsl", "gslcblas", "boost_iostreams", "z"]
library_dirs=['/usr//lib']
module = Extension("conedy", files, library_dirs=library_dirs,
libraries=libraries,
include_dirs=include_dirs,
depends=[])
def __init__(self, names, sources, openmp=False, **kw):
self.openmp = openmp
_Extension.__init__(self, names, sources, **kw)
def check_extensions_list(self, extensions):
"""Ensure that the list of extensions (presumably provided as a
command option 'extensions') is valid, i.e. it is a list of
Extension objects. We also support the old-style list of 2-tuples,
where the tuples are (ext_name, build_info), which are converted to
Extension instances here.
Raise DistutilsSetupError if the structure is invalid anywhere;
just returns otherwise.
"""
if not isinstance(extensions, list):
raise DistutilsSetupError, \
"'ext_modules' option must be a list of Extension instances"
for i, ext in enumerate(extensions):
if isinstance(ext, Extension):
continue # OK! (assume type-checking done
# by Extension constructor)
if not isinstance(ext, tuple) or len(ext) != 2:
raise DistutilsSetupError, \
("each element of 'ext_modules' option must be an "
"Extension instance or 2-tuple")
ext_name, build_info = ext
log.warn(("old-style (ext_name, build_info) tuple found in "
"ext_modules for extension '%s'"
"-- please convert to Extension instance" % ext_name))
if not (isinstance(ext_name, str) and
extension_name_re.match(ext_name)):
raise DistutilsSetupError, \
("first element of each tuple in 'ext_modules' "
"must be the extension name (a string)")
if not isinstance(build_info, dict):
raise DistutilsSetupError, \
("second element of each tuple in 'ext_modules' "
"must be a dictionary (build info)")
# OK, the (ext_name, build_info) dict is type-safe: convert it
# to an Extension instance.
ext = Extension(ext_name, build_info['sources'])
# Easy stuff: one-to-one mapping from dict elements to
# instance attributes.
for key in ('include_dirs', 'library_dirs', 'libraries',
'extra_objects', 'extra_compile_args',
'extra_link_args'):
val = build_info.get(key)
if val is not None:
setattr(ext, key, val)
# Medium-easy stuff: same syntax/semantics, different names.
ext.runtime_library_dirs = build_info.get('rpath')
if 'def_file' in build_info:
log.warn("'def_file' element of build info dict "
"no longer supported")
# Non-trivial stuff: 'macros' split into 'define_macros'
# and 'undef_macros'.
macros = build_info.get('macros')
if macros:
ext.define_macros = []
ext.undef_macros = []
for macro in macros:
if not (isinstance(macro, tuple) and len(macro) in (1, 2)):
raise DistutilsSetupError, \
("'macros' element of build info dict "
"must be 1- or 2-tuple")
if len(macro) == 1:
ext.undef_macros.append(macro[0])
elif len(macro) == 2:
ext.define_macros.append(macro)
extensions[i] = ext
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy
setup(
cmdclass = {'build_ext': build_ext},
ext_modules = [Extension("multithread_integrated", ["multithread_integrated.pyx"],
include_dirs=[numpy.get_include()]
)]
)
