def test_string_latin1_encoding_works(fpath):
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings(['latin1'])
with dlisio.load(fpath) as (f, *_):
channel = f.object('CHANNEL', 'CHANN1', 10, 0)
assert channel.units == "custom unit°"
finally:
dlisio.set_encodings(prev_encodings)
def test_string_encoding_warns(fpath):
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings([])
with pytest.warns(UnicodeWarning):
with dlisio.load(fpath) as (f, *_):
channel = f.object('CHANNEL', 'CHANN1', 10, 0)
assert channel.units == b'custom unit\xb0'
finally:
dlisio.set_encodings(prev_encodings)
def test_broken_utf8_object_name(tmpdir, merge_files_oneLR):
#some actual files have obname which fails with utf-8 codec
path = os.path.join(str(tmpdir), 'broken_utf8_object_name.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/broken-utf8-object.dlis.part',
]
merge_files_oneLR(path, content)
with pytest.warns(UnicodeWarning):
with dlisio.load(path):
pass
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings(['koi8_r'])
with dlisio.load(path) as (f, *_):
_ = f.object('VERY_MUCH_TESTY_SET', 'КАДР', 12, 4)
finally:
dlisio.set_encodings(prev_encodings)
def test_broken_utf8_label(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_label.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/broken-utf8-label.dlis.part',
'data/chap3/object/object.dlis.part',
]
merge_files_oneLR(path, content)
with pytest.warns(UnicodeWarning):
with dlisio.load(path):
pass
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings(['koi8_r'])
with dlisio.load(path) as (f, *_):
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT', 1, 1)
assert obj.attic['ДОХЛЫЙ-ПАРАМЕТР'] == ['Have a nice day!']
finally:
dlisio.set_encodings(prev_encodings)
def test_broken_utf8_set(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_set.dlis')
content = [
'data/chap3/sul.dlis.part',
'data/chap3/set/broken-utf8-set.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/object.dlis.part',
]
merge_files_oneLR(path, content)
with pytest.warns(UnicodeWarning):
with dlisio.load(path) as (f, *_):
f.load()
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings(['koi8_r'])
with dlisio.load(path) as (f, *_):
_ = f.object('СЕТ_КИРИЛЛИЦЕЙ', 'OBJECT', 1, 1)
#assert set_name == 'МЕНЯ.ЗОВУТ.СЕТ'
finally:
dlisio.set_encodings(prev_encodings)
def test_non_utf8_frame():
# findfdata (and hence load) should _not_ fail because of a non-utf8
# Frame name. Furthermore, it should be possible to extract the curves of
# said frame, provided that the right encoding is set.
fpath = 'data/chap4-7/encoded-obname.dlis'
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings(['koi8_r'])
f, = dlisio.load(fpath)
try:
fr = f.object('FRAME', 'ENCODED-[Б╣дTУБ1')
ch = fr.channels[0]
curves = fr.curves()
assert curves[fr.index] == [1]
assert curves[ch.fingerprint] == [32915]
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_broken_utf8_obname_value(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_obname_value.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/object.dlis.part',
'data/chap3/objattr/broken-utf8-obname-value.dlis.part',
]
merge_files_oneLR(path, content)
with pytest.warns(UnicodeWarning):
with dlisio.load(path):
pass
prev_encodings = dlisio.get_encodings()
try:
dlisio.set_encodings(['koi8_r'])
with dlisio.load(path) as (f, *_):
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT', 1, 1)
obname = (2, 2, 'КОТ')
assert obj.attic['DEFAULT_ATTRIBUTE'] == [obname]
finally:
dlisio.set_encodings(prev_encodings)
def test_broken_utf8_object_name(tmpdir, merge_files_oneLR):
#some actual files have obname which fails with utf-8 codec
path = os.path.join(str(tmpdir), 'broken_utf8_object_name.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/broken-utf8-object.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings([])
try:
f, = dlisio.load(path)
with pytest.warns(UnicodeWarning):
_ = f.match('.*', 'VERY_MUCH_TESTY_SET')
dlisio.set_encodings(['koi8_r'])
objs = f.match('.*', 'VERY_MUCH_TESTY_SET')
[obj] = [x for x in objs]
assert obj.name == 'КАДР'
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_broken_utf8_obname_value(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_obname_value.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/object.dlis.part',
'data/chap3/objattr/broken-utf8-obname-value.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings([])
try:
f, = dlisio.load(path)
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT', 1, 1)
obname = obj['DEFAULT_ATTRIBUTE'][0]
with pytest.warns(UnicodeWarning):
_ = obname.id
dlisio.set_encodings(['koi8_r'])
assert obname.id == 'КОТ'
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_broken_utf8_value(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_value.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/object.dlis.part',
'data/chap3/objattr/broken-utf8-value.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings([])
with pytest.warns(UnicodeWarning):
with dlisio.load(path) as (f, *_):
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT')
_ = obj['DEFAULT_ATTRIBUTE']
try:
dlisio.set_encodings(['koi8_r'])
with dlisio.load(path) as (f, *_):
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT', 1, 1)
assert obj['DEFAULT_ATTRIBUTE'] == ['ВАЖНЫЙ-ПАРАМЕТР']
assert obj.stash['DEFAULT_ATTRIBUTE'] == ['ВАЖНЫЙ-ПАРАМЕТР']
assert obj.attic['DEFAULT_ATTRIBUTE'].units == "2 локтя на долю"
finally:
dlisio.set_encodings(prev_encodings)
def test_broken_utf8_object_fp(tmpdir, merge_files_oneLR):
# Should be able to create object.fingerprint regardless of
# encoding
path = os.path.join(str(tmpdir), 'broken_utf8_object_name.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/broken-utf8-object.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings(['koi8_r'])
try:
f, = dlisio.load(path)
# With the correct encoding we should get a nice fingerprint
obj = f.object('VERY_MUCH_TESTY_SET', 'КАДР')
assert obj.fingerprint == 'T.VERY_MUCH_TESTY_SET-I.КАДР-O.12-C.0'
dlisio.set_encodings([])
# Without an matching encoding we should get a warning and
# a byte object
expected = b'T.VERY_MUCH_TESTY_SET-I.\xeb\xe1\xe4\xf2-O.12-C.0'
with pytest.warns(UnicodeWarning):
fp = obj.fingerprint
assert fp == expected
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_broken_utf8_set(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_set.dlis')
content = [
'data/chap3/sul.dlis.part',
'data/chap3/set/broken-utf8-set.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/object.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
try:
# at the moment load uses object_pool.types, so set encoding after load
f, = dlisio.load(path)
dlisio.set_encodings([])
with pytest.warns(UnicodeWarning):
_ = f.object_pool.types
dlisio.set_encodings(['koi8_r'])
assert 'СЕТ_КИРИЛЛИЦЕЙ' in f.object_pool.types
#assert set_name == 'МЕНЯ.ЗОВУТ.СЕТ'
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_access_to_object_with_non_utf8_name(tmpdir, merge_files_oneLR):
# Object with a non-utf8 name can be queried with dlis.object
# regardless of what encoding is set.
path = os.path.join(str(tmpdir), 'broken_utf8_object_name.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/default.dlis.part',
'data/chap3/object/broken-utf8-object.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings([])
try:
f, = dlisio.load(path)
# Can't expect to find an object with an encoded string
# if the encoding is not given to dlisio
with pytest.raises(ValueError):
with pytest.warns(UnicodeWarning):
_ = f.object('VERY_MUCH_TESTY_SET', 'КАДР')
# However it can be found by matching the bytes
with pytest.warns(UnicodeWarning):
obj = f.object('VERY_MUCH_TESTY_SET', b'\xeb\xe1\xe4\xf2')
assert obj.name == b'\xeb\xe1\xe4\xf2'
# When the encoding of the string parameter matches the encoding dlisio
# uses, we should expect to find the object
dlisio.set_encodings(['koi8_r'])
obj = f.object('VERY_MUCH_TESTY_SET', 'КАДР')
assert obj.name == 'КАДР'
finally:
dlisio.set_encodings(prev_encodings)
f.close()
def test_broken_utf8_label(tmpdir, merge_files_oneLR):
path = os.path.join(str(tmpdir), 'broken_utf8_label.dlis')
content = [
'data/chap3/start.dlis.part',
'data/chap3/template/broken-utf8-label.dlis.part',
'data/chap3/object/object.dlis.part',
]
merge_files_oneLR(path, content)
prev_encodings = dlisio.get_encodings()
dlisio.set_encodings([])
try:
f, = dlisio.load(path)
obj = f.object('VERY_MUCH_TESTY_SET', 'OBJECT', 1, 1)
with pytest.warns(UnicodeWarning):
_ = obj.attic.keys()
dlisio.set_encodings(['koi8_r'])
assert 'ДОХЛЫЙ-ПАРАМЕТР' in obj.attic.keys()
finally:
f.close()
dlisio.set_encodings(prev_encodings)
# python 3.6.8
# DLISIO v0.1.15
# numpy v1.16.2
# pandas v0.24.1
# lasio v0.23
import os
import pandas as pd
import lasio
import dlisio
dlisio.set_encodings(['latin1'])
import numpy as np
def convert_dlis_to_las(filepath, output_folder_location, null=-999.25):
filename = os.path.basename(filepath)
filename = os.path.splitext(filename)[0]
embedded_files = []
origins = []
frame_count = 0
def df_column_uniquify(df):
df_columns = df.columns
new_columns = []
for item in df_columns:
counter = 0
newitem = item
while newitem in new_columns:
counter += 1
newitem = "{}_{}".format(item, counter)
new_columns.append(newitem)
