def pretraining(self, train_x = None, train_y = None):
#print len(numpy.shape(train_y))
multi_classes = True if self.cfg.n_outs >= 3 else False
train_y = train_y.astype(dtype = theano.config.floatX)
train_y_T = train_y[numpy.newaxis].T
if multi_classes == False:
train_xy = numpy.hstack((train_x, train_y_T))
shared_train_xy = shared_dataset_X(train_xy)
else:
enc = OneHotEncoder(n_values = self.cfg.n_outs, dtype = theano.config.floatX, sparse=False)
encode_train_y = enc.fit_transform(train_y_T)
shared_train_xy = shared_dataset_X(numpy.hstack((train_x, encode_train_y)))
log('> ... getting the pre-training functions')
if train_x is None: # this means we are using the stream input from file
pass
else: # this means using numpy matrix as input
start_layer_index = 0; start_epoch_index = 0
log('> ... pre-training the model')
# layer by layer; for each layer, go through the epochs
for i in range(start_layer_index, self.cfg.ptr_layer_number):
pretraining_fn = self.pretraining_function(self.dA_layers[i], train_set_x = shared_train_xy, batch_size = self.cfg.batch_size)
for epoch in range(start_epoch_index, self.cfg.epochs):
# go through the training set
c = []
# while (not self.cfg.train_sets.is_finish()):
# self.cfg.train_sets.load_next_partition(self.cfg.train_xy)
iteration_per_epoch = train_x.shape[0] / self.cfg.batch_size if train_x.shape[0] / self.cfg.batch_size else 1
for batch_index in xrange(iteration_per_epoch): # loop over mini-batches
c.append(pretraining_fn(index=batch_index,
corruption=self.cfg.corruption_levels[i],
lr=self.cfg.learning_rates[i]
, momentum=self.cfg.momentum
))
# self.cfg.train_sets.initialize_read()
log('> layer %i, epoch %d, reconstruction cost %f' % (i, epoch, numpy.mean(c)))
hidden_values = self.dA_layers[i].transform(shared_train_xy.get_value())
if self.cfg.settings.has_key('firstlayer_xy') and self.cfg.settings['firstlayer_xy'] == 1:
shared_train_xy = shared_dataset_X(hidden_values)
else: # add y for every layer
if multi_classes == False:
train_xy = numpy.hstack((hidden_values, train_y_T))
shared_train_xy = shared_dataset_X(train_xy)
else:
shared_train_xy = shared_dataset_X(numpy.hstack((hidden_values, encode_train_y)))
def pretraining(self, train_x = None):
log('> ... getting the pre-training functions')
if train_x is not None:
batch_size = self.cfg.batch_size if train_x.shape[0] > self.cfg.batch_size else train_x.shape[0]
pretraining_fns = self.pretraining_functions(train_set_x=shared_dataset_X(train_x), batch_size=batch_size)
# resume training
start_layer_index = 0; start_epoch_index =
log('> ... pre-training the model')
# layer by layer; for each layer, go through the epochs
for i in range(start_layer_index, self.cfg.ptr_layer_number):
for epoch in range(start_epoch_index, self.cfg.epochs):
# go through the training set
c = []
for batch_index in xrange(train_x.shape[0] / batch_size): # loop over mini-batches
c.append(pretraining_fns[i](index=batch_index,
corruption=self.cfg.corruption_levels[i],
lr=self.cfg.learning_rates[i]
, momentum=self.cfg.momentum
))
log('> layer %i, epoch %d, reconstruction cost %f' % (i, epoch, numpy.mean(c)))
def pretraining_with_estop(self, X_train_minmax, settings):
batch_size = settings['batch_size']
corruption_levels = settings['corruption_levels']
pretrain_lr = settings['pretrain_lr']
momentum = settings['momentum']
pretraining_epochs = settings['pretraining_epochs']
n_visible = X_train_minmax.shape[1]
# shuffle examples:
from sklearn.utils import shuffle
X_train_minmax = shuffle(X_train_minmax, random_state=0)
train_set_x = shared_dataset_X(X_train_minmax[ :X_train_minmax.shape[0] / 2, :], borrow=True)
valid_set_x = shared_dataset_X(X_train_minmax[ X_train_minmax.shape[0] / 2:, :], borrow=True)
# compute number of minibatches for training, validation and testing
n_train_batches = train_set_x.get_value(borrow=True).shape[0]
if n_train_batches <= batch_size:
batch_size = n_train_batches
n_train_batches /= batch_size
# numpy random generator
numpy_rng = numpy.random.RandomState(66)
validation_funcs = self.get_cost_functions(valid_set_x)
pretraining_fns = self.pretraining_functions(train_set_x, batch_size)
# early-stopping parameters
# patience = 1000 * n_train_batches
patience_increase = 2. # wait this much longer when a new best is
# found
improvement_threshold = 0.995 # a relative improvement of this much is
# considered significant
validation_frequency = min(n_train_batches * pretraining_epochs / 200, 100)
# go through this many
# minibatche before checking the network
# on the validation set; in this case we
# check every epoch
print '... pre-training the model'
start_time = time.clock()
# Pre-train layer-wise
for i in xrange(self.n_layers):
# go through pretraining epochs
best_params = None
best_validation_loss = numpy.inf
test_score = 0.
done_looping = False
epoch = 0
best_iter = 0
patience = 5000 # look as this many iterations
while epoch < pretraining_epochs and (not done_looping):
# go through the training set
c = []
for minibatch_index in xrange(n_train_batches):
c.append(pretraining_fns[i](index=minibatch_index,
corruption=corruption_levels[i],
lr=pretrain_lr, momentum = momentum))
iter = epoch * n_train_batches + minibatch_index +1
if (iter + 1) % validation_frequency == 0:
this_validation_fn = validation_funcs[i]
this_validation_loss = this_validation_fn()
print('epoch %i, minibatch %i/%i, validation cost %f ' %
(epoch, minibatch_index + 1, n_train_batches,
this_validation_loss))
# if we got the best validation score until now
if this_validation_loss < best_validation_loss:
# improve patience if loss improvement is good enough
if (this_validation_loss < best_validation_loss *
improvement_threshold):
patience = max(patience, iter * patience_increase)
# save best validation score and iteration number
best_validation_loss = this_validation_loss
best_iter = iter
if patience <= iter:
done_looping = True
break
print 'Pre-training layer %i, epoch %d, cost ' % (i, epoch),
print numpy.mean(c)
epoch += 1
end_time = time.clock()
print >> sys.stderr, ('The pretraining code ran for %.2fm' % ((end_time - start_time) / 60.))