def test_run_dnadiff(self): """Test single dnadiff run""" dnadiff_dist_matrix.run_dnadiff( ospj(DATA_PATH, "sample0_gt1000_bin0.fa"), ospj(DATA_PATH, "sample0_gt1000_bin1.fa"), ospj(TMP_BASENAME_DIR, "out")) ok_(os.path.exists(ospj(TMP_BASENAME_DIR, "out.report")))
def test_mummer_report_class(self): """Test mummer report class""" dnadiff_dist_matrix.run_dnadiff(ospj(DATA_PATH, "sample0_gt1000_bin0.fa"), ospj(DATA_PATH, "sample0_gt1000_bin1.fa"), ospj(TMP_BASENAME_DIR, "out")) ok_(os.path.exists(ospj(TMP_BASENAME_DIR, "out.report"))) mumr = dnadiff_dist_matrix.MUMmerReport(ospj(TMP_BASENAME_DIR, "out.report")) assert_equal(mumr.tot_bases[0], 3213) assert_equal(mumr.tot_bases[1], 43514) assert_equal(mumr.aligned_bases[0], 0) assert_equal(mumr.aligned_bases[1], 0)
def test_mummer_report_class(self): """Test mummer report class""" dnadiff_dist_matrix.run_dnadiff( ospj(DATA_PATH, "sample0_gt1000_bin0.fa"), ospj(DATA_PATH, "sample0_gt1000_bin1.fa"), ospj(TMP_BASENAME_DIR, "out")) ok_(os.path.exists(ospj(TMP_BASENAME_DIR, "out.report"))) mumr = dnadiff_dist_matrix.MUMmerReport( ospj(TMP_BASENAME_DIR, "out.report")) assert_equal(mumr.tot_bases[0], 3213) assert_equal(mumr.tot_bases[1], 43514) assert_equal(mumr.aligned_bases[0], 0) assert_equal(mumr.aligned_bases[1], 0)
def test_run_dnadiff(self): """Test single dnadiff run""" dnadiff_dist_matrix.run_dnadiff(ospj(DATA_PATH, "sample0_gt1000_bin0.fa"), ospj(DATA_PATH, "sample0_gt1000_bin1.fa"), ospj(TMP_BASENAME_DIR, "out")) ok_(os.path.exists(ospj(TMP_BASENAME_DIR, "out.report")))