def test_dcb_rdf(self):
reader=DrugbankReader(builder=DrugcardBuilderRdf(),
fn=os.path.join(dir, 't', 'drugbank.2.txt'))
i=reader.__iter__()
dc=i.next()
print 'dc: id=%s' % dc.id
self.assertTrue(re.search('DB00001', dc.id))
self.assertEquals(len(dc.targets), 1)
self.assertEquals(len(dc.seqs.keys()), 1)
dc2=i.next()
print 'got dc=%s' % dc
for dc in reader:
print '2nd: id=%s' % dc.id
def test_dao(self):
fn=os.path.join(libdir, 'data', 'drugbank.2.txt')
reader=DrugbankReader(fn)
dc_dao=self.dc_dao
for dc in reader.iter():
print '%s: %d targets' % (dc.id, len(dc.targets))
dc_dao.save(dc)
dc1=dc_dao.find_first({'id':'DB00001'})
self.assertEquals(dc1.id,'DB00001')
self.assertEquals(dc1.AHFS_Codes, [u'20:12.04.12'])
print 'dc1: %d targets' % len(dc1.targets)
self.assertEquals(len(dc1.targets), 1)
t1=dc1.targets[0]
print 't1.Pathway[0]: %s' % t1.Pathway[0]
self.assertEquals(t1.Pathway[0], 'Abciximab Pathway SMP00265')
dc2=dc_dao.find_first({'id':'DB00002'})
self.assertEquals(dc2.id,'DB00002')
self.assertEquals(dc2.AHFS_Codes, [u'Not Available'])
print 'dc2: %d targets' % len(dc2.targets)
self.assertEquals(len(dc2.targets), 12)
