def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
known_mpi_libs = [toolchain.MPICH, toolchain.MPICH2, toolchain.MVAPICH2] #@UndefinedVariable
known_mpi_libs += [toolchain.OPENMPI, toolchain.QLOGICMPI] #@UndefinedVariable
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in known_mpi_libs:
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
self.log.error("Don't know which compiler commands to use.")
# set BLAS and LAPACK libs
extra_makeopts = None
self.log.deprecated("EB_ScaLAPACK.build_step doesn't use toolchain support for BLAS/LAPACK libs", '3.0')
if get_software_root('LAPACK'):
extra_makeopts = [
'BLASLIB="%s -lpthread"' % lapack_get_blas_lib(self.log),
'LAPACKLIB=%s/lib/liblapack.a' % get_software_root('LAPACK')
]
elif get_software_root('ACML'):
root = get_software_root('ACML')
acml_static_lib = os.path.join(root, os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR'), 'lib', 'libacml.a')
extra_makeopts = [
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
]
elif get_software_root('OpenBLAS'):
root = get_software_root('OpenBLAS')
extra_makeopts = [
'BLASLIB="%s -lpthread"' % lapack_get_blas_lib(self.log),
'LAPACKLIB="%s"' % lapack_get_blas_lib(self.log),
]
else:
self.log.error("LAPACK, ACML or OpenBLAS are not available, no idea how to set BLASLIB/LAPACKLIB make options.")
# build procedure changed in v2.0.0
if self.loosever < LooseVersion("2.0.0"):
blacs = get_software_root('BLACS')
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' % (self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [
('BLACSFINIT', "F77init"),
('BLACSCINIT', "Cinit"),
('BLACSLIB', "")
]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' % (var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" % interface)
else:
# determine interface
if self.toolchain.mpi_family() in known_mpi_libs:
interface = 'Add_'
else:
self.log.error("Don't know which interface to pick for the MPI library being used.")
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
self.cfg.update('buildopts', ' '.join(extra_makeopts))
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
known_mpi_libs = [toolchain.MPICH, toolchain.MPICH2, toolchain.MVAPICH2] #@UndefinedVariable
known_mpi_libs += [toolchain.OPENMPI, toolchain.QLOGICMPI] #@UndefinedVariable
known_mpi_libs += [toolchain.INTELMPI] #@UndefinedVariable
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in known_mpi_libs:
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
raise EasyBuildError("Don't know which compiler commands to use.")
# determine build options BLAS and LAPACK libs
extra_makeopts = []
acml = get_software_root(Acml.LAPACK_MODULE_NAME[0])
lapack = get_software_root(Lapack.LAPACK_MODULE_NAME[0])
openblas = get_software_root(OpenBLAS.LAPACK_MODULE_NAME[0])
intelmkl = get_software_root(IntelMKL.LAPACK_MODULE_NAME[0])
if lapack:
extra_makeopts.append('LAPACKLIB=%s' % os.path.join(lapack, 'lib', 'liblapack.a'))
for blas in [Atlas, Blis, GotoBLAS]:
blas_root = get_software_root(blas.BLAS_MODULE_NAME[0])
if blas_root:
blas_libs = ' '.join(['-l%s' % lib for lib in blas.BLAS_LIB])
extra_makeopts.append('BLASLIB="-L%s %s -lpthread"' % (os.path.join(blas_root, 'lib'), blas_libs))
break
if not blas_root:
raise EasyBuildError("Failed to find a known BLAS library, don't know how to define 'BLASLIB'")
elif acml:
acml_base_dir = os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR')
acml_static_lib = os.path.join(acml, acml_base_dir, 'lib', 'libacml.a')
extra_makeopts.extend([
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
])
elif openblas:
libdir = os.path.join(openblas, 'lib')
blas_libs = ' '.join(['-l%s' % lib for lib in OpenBLAS.BLAS_LIB])
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
elif intelmkl:
libdir = os.path.join(intelmkl, 'mkl', 'lib', 'intel64')
blas_libs = os.environ['LIBLAPACK']
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
else:
raise EasyBuildError("Unknown LAPACK library used, no idea how to set BLASLIB/LAPACKLIB make options")
# build procedure changed in v2.0.0
if self.loosever < LooseVersion('2.0.0'):
blacs = get_software_root(Blacs.BLACS_MODULE_NAME[0])
if not blacs:
raise EasyBuildError("BLACS not available, yet required for ScaLAPACK version < 2.0.0")
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' % (self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [
('BLACSFINIT', "F77init"),
('BLACSCINIT', "Cinit"),
('BLACSLIB', "")
]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' % (var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" % interface)
else:
# determine interface
if self.toolchain.mpi_family() in known_mpi_libs:
interface = 'Add_'
else:
raise EasyBuildError("Don't know which interface to pick for the MPI library being used.")
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
saved_buildopts = self.cfg['buildopts']
# Only build the library first, that can be done in parallel.
# Creating libscalapack.a may fail in parallel, but should work
# fine with non-parallel make afterwards
self.cfg.update('buildopts', 'lib')
self.cfg.update('buildopts', ' '.join(extra_makeopts))
# Copied from ConfigureMake easyblock
paracmd = ''
if self.cfg['parallel']:
paracmd = "-j %s" % self.cfg['parallel']
cmd = "%s make %s %s" % (self.cfg['prebuildopts'], paracmd, self.cfg['buildopts'])
# Ignore exit code for parallel run
(out, _) = run_cmd(cmd, log_ok=False, log_all=False, simple=False)
# Now remake libscalapack.a serially and the tests.
self.cfg['buildopts'] = saved_buildopts
self.cfg.update('buildopts', ' '.join(extra_makeopts))
remove_file('libscalapack.a')
self.cfg['parallel'] = 1
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
known_mpi_libs = [
toolchain.MPICH, toolchain.MPICH2, toolchain.MVAPICH2
] #@UndefinedVariable
known_mpi_libs += [toolchain.OPENMPI,
toolchain.QLOGICMPI] #@UndefinedVariable
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in known_mpi_libs:
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
raise EasyBuildError("Don't know which compiler commands to use.")
# determine build options BLAS and LAPACK libs
extra_makeopts = []
acml = get_software_root(Acml.LAPACK_MODULE_NAME[0])
lapack = get_software_root(Lapack.LAPACK_MODULE_NAME[0])
openblas = get_software_root(OpenBLAS.LAPACK_MODULE_NAME[0])
if lapack:
extra_makeopts.append('LAPACKLIB=%s' %
os.path.join(lapack, 'lib', 'liblapack.a'))
for blas in [Atlas, GotoBLAS]:
blas_root = get_software_root(blas.BLAS_MODULE_NAME[0])
if blas_root:
blas_libs = ' '.join(
['-l%s' % lib for lib in blas.BLAS_LIB])
extra_makeopts.append(
'BLASLIB="-L%s %s -lpthread"' %
(os.path.join(blas_root, 'lib'), blas_libs))
break
if not blas_root:
raise EasyBuildError(
"Failed to find a known BLAS library, don't know how to define 'BLASLIB'"
)
elif acml:
acml_base_dir = os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR')
acml_static_lib = os.path.join(acml, acml_base_dir, 'lib',
'libacml.a')
extra_makeopts.extend([
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
])
elif openblas:
libdir = os.path.join(openblas, 'lib')
blas_libs = ' '.join(['-l%s' % lib for lib in OpenBLAS.BLAS_LIB])
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
else:
raise EasyBuildError(
"Unknown LAPACK library used, no idea how to set BLASLIB/LAPACKLIB make options"
)
# build procedure changed in v2.0.0
if self.loosever < LooseVersion('2.0.0'):
blacs = get_software_root(Blacs.BLACS_MODULE_NAME[0])
if not blacs:
raise EasyBuildError(
"BLACS not available, yet required for ScaLAPACK version < 2.0.0"
)
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' %
(self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [('BLACSFINIT', "F77init"), ('BLACSCINIT', "Cinit"),
('BLACSLIB', "")]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' %
(var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" %
interface)
else:
# determine interface
if self.toolchain.mpi_family() in known_mpi_libs:
interface = 'Add_'
else:
raise EasyBuildError(
"Don't know which interface to pick for the MPI library being used."
)
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
self.cfg.update('buildopts', ' '.join(extra_makeopts))
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in [
toolchain.OPENMPI, toolchain.MVAPICH2, toolchain.MPICH
]: #@UndefinedVariable
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
self.log.error("Don't know which compiler commands to use.")
# set BLAS and LAPACK libs
extra_makeopts = None
self.log.deprecated(
"EB_ScaLAPACK.build_step doesn't use toolchain support for BLAS/LAPACK libs",
"2.0")
if get_software_root('LAPACK'):
extra_makeopts = [
'BLASLIB="%s -lpthread"' % lapack_get_blas_lib(self.log),
'LAPACKLIB=%s/lib/liblapack.a' % get_software_root('LAPACK')
]
elif get_software_root('ACML'):
root = get_software_root('ACML')
acml_static_lib = os.path.join(
root, os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR'), 'lib',
'libacml.a')
extra_makeopts = [
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
]
elif get_software_root('OpenBLAS'):
root = get_software_root('OpenBLAS')
extra_makeopts = [
'BLASLIB="%s -lpthread"' % lapack_get_blas_lib(self.log),
'LAPACKLIB="%s"' % lapack_get_blas_lib(self.log),
]
else:
self.log.error(
"LAPACK, ACML or OpenBLAS are not available, no idea how to set BLASLIB/LAPACKLIB make options."
)
# build procedure changed in v2.0.0
if self.loosever < LooseVersion("2.0.0"):
blacs = get_software_root('BLACS')
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' %
(self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [('BLACSFINIT', "F77init"), ('BLACSCINIT', "Cinit"),
('BLACSLIB', "")]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' %
(var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" %
interface)
else:
# determine interface
if self.toolchain.mpi_family() in [
toolchain.OPENMPI, toolchain.MVAPICH2, toolchain.MPICH
]: #@UndefinedVariable
interface = 'Add_'
else:
self.log.error(
"Don't know which interface to pick for the MPI library being used."
)
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
self.cfg.update('makeopts', ' '.join(extra_makeopts))
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
known_mpi_libs = [toolchain.MPICH, toolchain.MPICH2, toolchain.MVAPICH2] #@UndefinedVariable
known_mpi_libs += [toolchain.OPENMPI, toolchain.QLOGICMPI] #@UndefinedVariable
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in known_mpi_libs:
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
raise EasyBuildError("Don't know which compiler commands to use.")
# determine build options BLAS and LAPACK libs
extra_makeopts = []
acml = get_software_root(Acml.LAPACK_MODULE_NAME[0])
lapack = get_software_root(Lapack.LAPACK_MODULE_NAME[0])
openblas = get_software_root(OpenBLAS.LAPACK_MODULE_NAME[0])
if lapack:
extra_makeopts.append('LAPACKLIB=%s' % os.path.join(lapack, 'lib', 'liblapack.a'))
for blas in [Atlas, GotoBLAS]:
blas_root = get_software_root(blas.BLAS_MODULE_NAME[0])
if blas_root:
blas_libs = ' '.join(['-l%s' % lib for lib in blas.BLAS_LIB])
extra_makeopts.append('BLASLIB="-L%s %s -lpthread"' % (os.path.join(blas_root, 'lib'), blas_libs))
break
if not blas_root:
raise EasyBuildError("Failed to find a known BLAS library, don't know how to define 'BLASLIB'")
elif acml:
acml_base_dir = os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR')
acml_static_lib = os.path.join(acml, acml_base_dir, 'lib', 'libacml.a')
extra_makeopts.extend([
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
])
elif openblas:
libdir = os.path.join(openblas, 'lib')
blas_libs = ' '.join(['-l%s' % lib for lib in OpenBLAS.BLAS_LIB])
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
else:
raise EasyBuildError("Unknown LAPACK library used, no idea how to set BLASLIB/LAPACKLIB make options")
# build procedure changed in v2.0.0
if self.loosever < LooseVersion('2.0.0'):
blacs = get_software_root(Blacs.BLACS_MODULE_NAME[0])
if not blacs:
raise EasyBuildError("BLACS not available, yet required for ScaLAPACK version < 2.0.0")
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' % (self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [
('BLACSFINIT', "F77init"),
('BLACSCINIT', "Cinit"),
('BLACSLIB', "")
]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' % (var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" % interface)
else:
# determine interface
if self.toolchain.mpi_family() in known_mpi_libs:
interface = 'Add_'
else:
raise EasyBuildError("Don't know which interface to pick for the MPI library being used.")
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
self.cfg.update('buildopts', ' '.join(extra_makeopts))
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
known_mpi_libs = [
toolchain.MPICH, toolchain.MPICH2, toolchain.MVAPICH2
] #@UndefinedVariable
known_mpi_libs += [toolchain.OPENMPI,
toolchain.QLOGICMPI] #@UndefinedVariable
known_mpi_libs += [toolchain.INTELMPI] #@UndefinedVariable
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in known_mpi_libs:
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
raise EasyBuildError("Don't know which compiler commands to use.")
# determine build options BLAS and LAPACK libs
extra_makeopts = []
acml = get_software_root(Acml.LAPACK_MODULE_NAME[0])
lapack = get_software_root(Lapack.LAPACK_MODULE_NAME[0])
openblas = get_software_root(OpenBLAS.LAPACK_MODULE_NAME[0])
intelmkl = get_software_root(IntelMKL.LAPACK_MODULE_NAME[0])
if lapack:
extra_makeopts.append('LAPACKLIB=%s' %
os.path.join(lapack, 'lib', 'liblapack.a'))
for blas in [Atlas, Blis, GotoBLAS]:
blas_root = get_software_root(blas.BLAS_MODULE_NAME[0])
if blas_root:
blas_libs = ' '.join(
['-l%s' % lib for lib in blas.BLAS_LIB])
extra_makeopts.append(
'BLASLIB="-L%s %s -lpthread"' %
(os.path.join(blas_root, 'lib'), blas_libs))
break
if not blas_root:
raise EasyBuildError(
"Failed to find a known BLAS library, don't know how to define 'BLASLIB'"
)
elif acml:
acml_base_dir = os.getenv('ACML_BASEDIR', 'NO_ACML_BASEDIR')
acml_static_lib = os.path.join(acml, acml_base_dir, 'lib',
'libacml.a')
extra_makeopts.extend([
'BLASLIB="%s -lpthread"' % acml_static_lib,
'LAPACKLIB=%s' % acml_static_lib
])
elif openblas:
libdir = os.path.join(openblas, 'lib')
blas_libs = ' '.join(['-l%s' % lib for lib in OpenBLAS.BLAS_LIB])
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
elif intelmkl:
libdir = os.path.join(intelmkl, 'mkl', 'lib', 'intel64')
blas_libs = os.environ['LIBLAPACK']
extra_makeopts.extend([
'BLASLIB="-L%s %s -lpthread"' % (libdir, blas_libs),
'LAPACKLIB="-L%s %s"' % (libdir, blas_libs),
])
else:
raise EasyBuildError(
"Unknown LAPACK library used, no idea how to set BLASLIB/LAPACKLIB make options"
)
# build procedure changed in v2.0.0
if self.loosever < LooseVersion('2.0.0'):
blacs = get_software_root(Blacs.BLACS_MODULE_NAME[0])
if not blacs:
raise EasyBuildError(
"BLACS not available, yet required for ScaLAPACK version < 2.0.0"
)
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' %
(self.cfg['start_dir'], blacs))
# set BLACS libs correctly
blacs_libs = [('BLACSFINIT', "F77init"), ('BLACSCINIT', "Cinit"),
('BLACSLIB', "")]
for (var, lib) in blacs_libs:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' %
(var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" %
interface)
else:
# determine interface
if self.toolchain.mpi_family() in known_mpi_libs:
interface = 'Add_'
else:
raise EasyBuildError(
"Don't know which interface to pick for the MPI library being used."
)
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc,
'CCFLAGS="%s"' % os.getenv('CFLAGS'),
'FCFLAGS="%s"' % os.getenv('FFLAGS'),
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
saved_buildopts = self.cfg['buildopts']
# Only build the library first, that can be done in parallel.
# Creating libscalapack.a may fail in parallel, but should work
# fine with non-parallel make afterwards
self.cfg.update('buildopts', 'lib')
self.cfg.update('buildopts', ' '.join(extra_makeopts))
# Copied from ConfigureMake easyblock
paracmd = ''
if self.cfg['parallel']:
paracmd = "-j %s" % self.cfg['parallel']
cmd = "%s make %s %s" % (self.cfg['prebuildopts'], paracmd,
self.cfg['buildopts'])
# Ignore exit code for parallel run
(out, _) = run_cmd(cmd, log_ok=False, log_all=False, simple=False)
# Now remake libscalapack.a serially and the tests.
self.cfg['buildopts'] = saved_buildopts
self.cfg.update('buildopts', ' '.join(extra_makeopts))
remove_file('libscalapack.a')
self.cfg['parallel'] = 1
super(EB_ScaLAPACK, self).build_step()
def build_step(self):
"""Build ScaLAPACK using make after setting make options."""
# MPI compiler commands
if os.getenv('MPICC') and os.getenv('MPIF77') and os.getenv('MPIF90'):
mpicc = os.getenv('MPICC')
mpif77 = os.getenv('MPIF77')
mpif90 = os.getenv('MPIF90')
elif self.toolchain.mpi_family() in [toolchain.OPENMPI, toolchain.MVAPICH2]: #@UndefinedVariable
mpicc = 'mpicc'
mpif77 = 'mpif77'
mpif90 = 'mpif90'
else:
self.log.error("Don't know which compiler commands to use.")
# set BLAS and LAPACK libs
extra_makeopts = [
'BLASLIB="%s -lpthread"' % get_blas_lib(self.log),
'LAPACKLIB=%s/lib/liblapack.a' % get_software_root('LAPACK')
]
# build procedure changed in v2.0.0
if self.loosever < LooseVersion("2.0.0"):
blacs = get_software_root('BLACS')
# determine interface
interface = det_interface(self.log, os.path.join(blacs, 'bin'))
# set build and BLACS dir correctly
extra_makeopts.append('home=%s BLACSdir=%s' % (self.cfg['start_dir'], blacs))
# set BLACS libs correctly
for (var, lib) in [
('BLACSFINIT', "F77init"),
('BLACSCINIT', "Cinit"),
('BLACSLIB', "")
]:
extra_makeopts.append('%s=%s/lib/libblacs%s.a' % (var, blacs, lib))
# set compilers and options
noopt = ''
if self.toolchain.options['noopt']:
noopt += " -O0"
if self.toolchain.options['pic']:
noopt += " -fPIC"
extra_makeopts += [
'F77="%s"' % mpif77,
'CC="%s"' % mpicc,
'NOOPT="%s"' % noopt,
'CCFLAGS="-O3 %s"' % os.getenv('CFLAGS')
]
# set interface
extra_makeopts.append("CDEFS='-D%s -DNO_IEEE $(USEMPI)'" % interface)
else:
# determine interface
if self.toolchain.mpi_family() in [toolchain.OPENMPI, toolchain.MVAPICH2]: #@UndefinedVariable
interface = 'Add_'
else:
self.log.error("Don't know which interface to pick for the MPI library being used.")
# set compilers and options
extra_makeopts += [
'FC="%s"' % mpif90,
'CC="%s"' % mpicc
]
# set interface
extra_makeopts.append('CDEFS="-D%s"' % interface)
# update make opts, and build_step
self.cfg.update('makeopts', ' '.join(extra_makeopts))
super(EB_ScaLAPACK, self).build_step()
