#!/usr/bin/env python2.4
import sys
from egsnrc import EGSPhant
if len(sys.argv) == 1:
print "Need one argument, name of phantom file to fix"
else:
try:
phant = EGSPhant(sys.argv[1])
except IOError:
raise
suffix = '.egsphant'
phant.fix_density()
basename = sys.argv[1].split(suffix)[0]
newname = basename + '_fixed' + suffix
phant.save(newname)
#!/usr/bin/env python2.4
import sys
from egsnrc import EGSPhant
if len(sys.argv) == 1:
print "Need one argument, name of phantom file to fix"
else:
try:
phant = EGSPhant(sys.argv[1])
except IOError:
raise
suffix = ".egsphant"
phant.fix_density()
basename = sys.argv[1].split(suffix)[0]
newname = basename + "_fixed" + suffix
phant.save(newname)
#!/usr/bin/env python2.4
# $Id: fix_phantom_tissue.py 86 2007-11-12 22:11:40Z dwchin $
from egsnrc.EGSPhant import *
if len(sys.argv) == 1:
print 'Need name of egsphant file'
sys.exit(1)
p = EGSPhant(sys.argv[1])
# set the density for tissue and bone voxels
for k in range(p.dimensions[2]):
for j in range(p.dimensions[1]):
for i in range(p.dimensions[0]):
mat = p.material(p.materialscan[k,j,i])
if mat == 'ICRUTISSUE700ICRU':
proper_dens = 1.0
p.densityscan[k,j,i] = proper_dens
elif mat == 'ICRPBONE700ICRU': # set to mid-range value
proper_dens = 0.5 * (p.density[mat][0] + p.density[mat][1])
p.densityscan[k,j,i] = proper_dens
new_filename = p.phantfilename.split('.egsphant')[0] + '_fixed.egsphant'
p.save(new_filename)
#!/usr/bin/env python2.4
# $Id: fix_phantom_tissue.py 86 2007-11-12 22:11:40Z dwchin $
from egsnrc.EGSPhant import *
if len(sys.argv) == 1:
print 'Need name of egsphant file'
sys.exit(1)
p = EGSPhant(sys.argv[1])
# set the density for tissue and bone voxels
for k in range(p.dimensions[2]):
for j in range(p.dimensions[1]):
for i in range(p.dimensions[0]):
mat = p.material(p.materialscan[k, j, i])
if mat == 'ICRUTISSUE700ICRU':
proper_dens = 1.0
p.densityscan[k, j, i] = proper_dens
elif mat == 'ICRPBONE700ICRU': # set to mid-range value
proper_dens = 0.5 * (p.density[mat][0] + p.density[mat][1])
p.densityscan[k, j, i] = proper_dens
new_filename = p.phantfilename.split('.egsphant')[0] + '_fixed.egsphant'
p.save(new_filename)
