def test_indices_str(self):
idx_str = ElasticSettings.indices_str()
self.assertTrue(idx_str in [
IDX['GFF_GENERIC']['indexName'] + ',' +
IDX['MARKER']['indexName'], IDX['MARKER']['indexName'] + ',' +
IDX['GFF_GENERIC']['indexName']
])
def search(request, query, search_idx=ElasticSettings.indices_str()):
''' Renders a elastic results page based on the query '''
aggs = Aggs(Agg("categories", "terms", {"field": "_type", "size": 0}))
elastic = Search.field_search_query(query, aggs=aggs, fields=fields,
search_from=0, size=20, idx=search_idx)
result = elastic.search()
context = {}
context['diseases'] = _add_diseases()
context['total'] = result.hits_total
context['db'] = result.idx
context['size'] = result.size
context['query'] = result.query
context["idxs"] = _categories(result.idx)
return render(request, 'search/searchresults.html', context,
content_type='text/html')
def range_overlap_search(request, src, start, stop, search_idx=ElasticSettings.indices_str()):
''' Renders a elastic result page based on the src, start and stop '''
elastic = Search.range_overlap_query(src, start, stop, idx=search_idx)
result = elastic.search()
context = {}
context['diseases'] = _add_diseases()
context['total'] = result.hits_total
context['db'] = result.idx
context['size'] = result.size
context['query'] = result.query
context["idxs"] = _categories(result.idx)
context["chromosome"] = src
context["start"] = start
context["stop"] = stop
return render(request, 'search/searchresults.html', context,
content_type='text/html')
def search(request, query, search_idx=ElasticSettings.indices_str()):
''' Renders a elastic results page based on the query '''
aggs = Aggs(Agg("categories", "terms", {"field": "_type", "size": 0}))
elastic = Search.field_search_query(query,
aggs=aggs,
fields=fields,
search_from=0,
size=20,
idx=search_idx)
result = elastic.search()
context = {}
context['diseases'] = _add_diseases()
context['total'] = result.hits_total
context['db'] = result.idx
context['size'] = result.size
context['query'] = result.query
context["idxs"] = _categories(result.idx)
return render(request,
'search/searchresults.html',
context,
content_type='text/html')
def range_overlap_search(request,
src,
start,
stop,
search_idx=ElasticSettings.indices_str()):
''' Renders a elastic result page based on the src, start and stop '''
elastic = Search.range_overlap_query(src, start, stop, idx=search_idx)
result = elastic.search()
context = {}
context['diseases'] = _add_diseases()
context['total'] = result.hits_total
context['db'] = result.idx
context['size'] = result.size
context['query'] = result.query
context["idxs"] = _categories(result.idx)
context["chromosome"] = src
context["start"] = start
context["stop"] = stop
return render(request,
'search/searchresults.html',
context,
content_type='text/html')