def handle_component_not_found(client_state, username, component_id):
"""Handles the error when the server fails to find a component"""
current_app.logger.debug("Failed to find component " + str(component_id) + \
". Trying to resolve issue...")
# Was it the component that the user is currently on?
if client_state["componentid"] == component_id:
# Yes
sequence_id = 0
try:
# Get the sequence
sequence_id = client_state["sequenceid"]
sequence = db.get_sequence(sequence_id)
# Move the client to the first unit operation
client_state["componentid"] = sequence["components"][0]["id"]
db.update_user_client_state(username, client_state)
current_app.logger.warn("Redirecting user to the " + \
"first component of sequence " + str(sequence_id))
except Exceptions.SequenceNotFoundException as ex:
# Sequence not found
current_app.logger.error("Sequence Not Found Exception" + str(ex))
return handle_sequence_not_found(client_state,
username, sequence_id)
# Return the state
elixys_get_state = Elixys_Get_State()
return elixys_get_state.state_index()
def save_client_state_and_return(client_state, username):
'''
Function expects a client state and a string username.
Function shall update the client state before calling
GET /State from Elixys_Get_State().
Function shall return the output of state_index() called
from Elixys_Get_State.
'''
db.update_user_client_state(username, client_state)
# Call GET /STATE and return
get_state = Elixys_Get_State()
return get_state.state_index()
def handle_reagent_not_found(client_state, username, reagent_id):
"""Handles the error when the server fails to find a reagent"""
current_app.logger.debug("Failed to find reagent " + str(reagent_id))
# This error should only occur if the user has
# the sequence they are currently viewing delete out from
# under them. Redirect them to the last Select Sequence screen
client_state = direct_to_last_select_screen(client_state)
db.update_user_client_state(username, client_state)
current_app.logger.warn("Redirecting user to select sequences page")
# Return the state
get_state = Elixys_Get_State()
return get_state.state_index()
def delete_index(s_id, c_id):
'''
Function handles a DELETE request from a web request
in the form of:
DELETE /Elixys/sequence/<sequenceid>/component/<componentid>
Function expects two parameters, both integers, that are passed
in from the web request.
Function will delete the given sequence's component by it's id
on the database. Function shall also update the client state
by moving to the previous component on the "Edit Sequence"
screen on the client.
Function shall return the output of GET /Elixys/state.
(See elixys_web_get.py)
'''
auth = request.authorization
username = str(auth.username)
client_state = getCurrentClientState(username)
current_app.logger.debug("Handling request: " + str(request))
# Make sure we can edit this sequence
sequence_metadata = db.GetSequenceMetadata(username, int(s_id))
if sequence_metadata["sequencetype"] != "Saved":
raise Exception("Cannot edit sequence")
# Is the user currently viewing this component?
if ((client_state["sequenceid"] == int(s_id))
and (client_state["componentid"] == int(c_id))):
# Yes, so move the user to the previous component in the sequence
previous_component = db.get_previous_component(int(c_id))
if previous_component == None:
raise Exception("Failed to find previous component")
# Update the client state
client_state["componentid"] = previous_component["id"]
db.update_user_client_state(username, client_state)
# Delete the sequence component
sequence_manager.DeleteComponent(username, int(s_id), int(c_id))
# Return the state
current_app.logger.debug("Calling GET /state")
get_state = Elixys_Get_State()
return get_state.state_index()
def delete_index(s_id, c_id):
'''
Function handles a DELETE request from a web request
in the form of:
DELETE /Elixys/sequence/<sequenceid>/component/<componentid>
Function expects two parameters, both integers, that are passed
in from the web request.
Function will delete the given sequence's component by it's id
on the database. Function shall also update the client state
by moving to the previous component on the "Edit Sequence"
screen on the client.
Function shall return the output of GET /Elixys/state.
(See elixys_web_get.py)
'''
auth = request.authorization
username = str(auth.username)
client_state = getCurrentClientState(username)
current_app.logger.debug("Handling request: " + str(request))
# Make sure we can edit this sequence
sequence_metadata = db.GetSequenceMetadata(username, int(s_id))
if sequence_metadata["sequencetype"] != "Saved":
raise Exception("Cannot edit sequence")
# Is the user currently viewing this component?
if ((client_state["sequenceid"] == int(s_id))
and (client_state["componentid"] == int(c_id))):
# Yes, so move the user to the previous component in the sequence
previous_component = db.get_previous_component(int(c_id))
if previous_component == None:
raise Exception("Failed to find previous component")
# Update the client state
client_state["componentid"] = previous_component["id"]
db.update_user_client_state(username, client_state)
# Delete the sequence component
sequence_manager.DeleteComponent(username, int(s_id), int(c_id))
# Return the state
current_app.logger.debug("Calling GET /state")
get_state = Elixys_Get_State()
return get_state.state_index()
def handle_sequence_not_found(client_state, username, sequence_id):
"""Handles the error when the server fails to find a sequence"""
current_app.logger.debug("Failed to find sequence %s " % str(sequence_id))
# Was it the sequence that the user is currently on?
if client_state["sequenceid"] == sequence_id:
# Yes, so return the user to the last Select Sequence screen
client_state = direct_to_last_select_screen(client_state)
db.update_user_client_state(username, client_state)
current_app.logger.error("Redirecting user to select sequences page")
# Return the state
return Elixys_Get_State.state_index()
