def __write_algn(self, fullpath): """ to write algn in paml format """ seq_group = SeqGroup() for n in self: seq_group.id2seq[n.node_id] = n.nt_sequence seq_group.id2name[n.node_id] = n.name seq_group.name2id[n.name] = n.node_id seq_group.write(outfile=fullpath, format='paml')
def __write_algn(self, fullpath): """ to write algn in paml format """ seq_group = SeqGroup () for n in self: seq_group.id2seq [n.node_id] = n.nt_sequence seq_group.id2name [n.node_id] = n.name seq_group.name2id [n.name ] = n.node_id seq_group.write (outfile=fullpath, format='paml')