def set_up(self): Session.remove() EntityTestCase.set_up(self) local_settings = self.config.get_settings() tractor_config_file = local_settings['tractor_config_file'] tractor_api = make_api_from_config(tractor_config_file) self.config.registry.registerUtility(tractor_api, ITractor) # pylint: disable=E1103
def __setup_thelma(self, ini_file): here_dir = os.getcwd() config_uri = 'config:%s' % ini_file self.logging_file_config(ini_file) # pylint: disable=E1101 settings = appconfig(config_uri, 'thelma', relative_to=here_dir) reg = Registry('thelma') # Some tools need to resolve URLs, so we need to set up a request # and a service. url = 'http://0.0.0.0:6543' req = DummyRequest(application_url=url, host_url=url, path_url=url, url=url, registry=reg) config = create_config(settings, registry=reg) config.setup_registry(settings=settings) config.begin(request=req) config.load_zcml('configure.zcml') srvc = config.get_registered_utility(IService) req.root = srvc # Set up repositories. repo_mgr = config.get_registered_utility(IRepositoryManager) repo_mgr.initialize_all() # Start the everest service. srvc.start() # Configure the session maker. session_maker.configure(extension=ZopeTransactionExtension()) # Set up machinery to enforce a session.flush() just before the # report is run so we have proper IDs in the output. # FIXME: This should be encapsulated better, perhaps depending on # an option that selects the backend. def on_session_begin(session, trx, conn): # pylint: disable=W0613 self._report_callback = lambda sess = session: sess.flush() event.listen(Session, 'after_begin', on_session_begin) return config
def set_up(self): Session.remove() EntityTestCase.set_up(self) local_settings = self.config.get_settings() tractor_config_file = local_settings['tractor_config_file'] tractor_api = make_api_from_config(tractor_config_file) self.config.registry.registerUtility(tractor_api, ITractor) # pylint: disable=E1103
def run(self): session = Session() query = self.QUERY_TEMPLATE % self.CUSTOM_BITS[self.__molecule_type] self.add_info('Running stock query for %s molecules.\n%s' % (self.__molecule_type, query)) records = session.execute(query) column_map = self.COLUMN_MAP.copy() if self.__molecule_type == 'SIRNA': column_map['library'] = 'Ambion Library' column_map['modification'] = 'Modification' column_map['silencerselect'] = 'Silencer Select' elif self.__molecule_type in ('MIRNA_INHI', 'MIRNA_MIMI'): column_map['library'] = 'Library Y/N' csv_file = open(self.__output_file, 'w') with csv_file: csv_writer = DictWriter(csv_file, column_map.values(), dialect='audit') self.add_info('Exporting audit report to file "%s".' % self.__output_file) number_records = 0 csv_writer.writeheader() for record in records: # Translate keys to labels. rec_map = {} for key, label in column_map.iteritems(): rec_map[label] = record[key] csv_writer.writerow(rec_map) number_records += 1 self.add_info('Wrote %d records to file.' % number_records)
def teardown_class(cls): base_cls = super(RdbTestCaseMixin, cls) try: base_cls.teardown_class() except AttributeError: pass Session.remove() assert not Session.registry.has() reset_metadata()
def run(self): sess = ScopedSessionMaker() for bc in self.__barcodes: rack = self.__get_rack(bc) for src_cnt in itervalues_(rack.container_positions): if not src_cnt is None: if not src_cnt.sample is None: sess.delete(src_cnt.sample) rack.status = get_item_status_future()
def run(self): sess = ScopedSessionMaker() for bc in self.__barcodes: rack = self.__get_rack(bc) for src_cnt in itervalues_(rack.container_positions): if not src_cnt is None: if not src_cnt.sample is None: sess.delete(src_cnt.sample) rack.status = get_item_status_future()
def teardown_class(cls): base_cls = super(RdbTestCaseMixin, cls) try: base_cls.teardown_class() except AttributeError: pass Session.remove() assert not Session.registry.has() reset_metadata()
def __exit__(self, ext_type, value, tb): # Roll back the outer transaction and close the connection. self.__session.close() self.__transaction.rollback() self.__connection.close() # Remove the session we created. Session.remove() # Restore flags. Session.configure(autoflush=self.__old_autoflush_flag, bind=get_engine(self.__engine_name)) self.__repo.join_transaction = self.__old_join_transaction_flag
def __exit__(self, ext_type, value, tb): # Roll back the outer transaction and close the connection. self.__session.close() self.__transaction.rollback() self.__connection.close() # Remove the session we created. Session.remove() # Restore flags. Session.configure(autoflush=self.__old_autoflush_flag, bind=get_engine(self.__engine_name)) self.__repo.join_transaction = self.__old_join_transaction_flag
def __setup_thelma(self, ini_file): here_dir = os.getcwd() config_uri = 'config:%s' % ini_file self.logging_file_config(ini_file) # pylint: disable=E1101 settings = appconfig(config_uri, 'thelma', relative_to=here_dir) reg = Registry('thelma') # Some tools need to resolve URLs, so we need to set up a request # and a service. url = 'http://0.0.0.0:6543' req = DummyRequest(application_url=url, host_url=url, path_url=url, url=url, registry=reg) config = create_config(settings, registry=reg) config.setup_registry(settings=settings) config.begin(request=req) config.load_zcml('configure.zcml') srvc = config.get_registered_utility(IService) req.root = srvc # Set up repositories. repo_mgr = config.get_registered_utility(IRepositoryManager) repo_mgr.initialize_all() # Start the everest service. srvc.start() # Configure the session maker. session_maker.configure(extension=ZopeTransactionExtension()) # Set up machinery to enforce a session.flush() just before the # report is run so we have proper IDs in the output. # FIXME: This should be encapsulated better, perhaps depending on # an option that selects the backend. def on_session_begin(session, trx, conn): # pylint: disable=W0613 self._report_callback = lambda sess=session: sess.flush() event.listen(Session, 'after_begin', on_session_begin) return config
def __enter__(self): # We set up an outer transaction that allows us to roll back all # changes (including commits) the unittest may want to make. engine = get_engine(self.__engine_name) self.__connection = engine.connect() self.__transaction = self.__connection.begin() reg = get_current_registry() repo_mgr = reg.getUtility(IRepositoryManager) self.__repo = repo_mgr.get(self.__engine_name) # Configure the autoflush behavior of the session. if Session.registry.has(): self.__old_autoflush_flag = Session.autoflush # pylint:disable=E1101 else: self.__old_autoflush_flag = self.__autoflush Session.remove() Session.configure(autoflush=self.__autoflush) # Create a new session for the tests. Session.configure(bind=self.__connection) self.__old_join_transaction_flag = self.__repo.join_transaction self.__repo.join_transaction = False self.__session = self.__repo.session_factory() return self.__session
def __enter__(self): # We set up an outer transaction that allows us to roll back all # changes (including commits) the unittest may want to make. engine = get_engine(self.__engine_name) self.__connection = engine.connect() self.__transaction = self.__connection.begin() reg = get_current_registry() repo_mgr = reg.getUtility(IRepositoryManager) self.__repo = repo_mgr.get(self.__engine_name) # Configure the autoflush behavior of the session. if Session.registry.has(): self.__old_autoflush_flag = Session.autoflush # pylint:disable=E1101 else: self.__old_autoflush_flag = self.__autoflush Session.remove() Session.configure(autoflush=self.__autoflush) # Create a new session for the tests. Session.configure(bind=self.__connection) self.__old_join_transaction_flag = self.__repo.join_transaction self.__repo.join_transaction = False self.__session = self.__repo.session_factory() return self.__session
def set_up(self): Session.remove() ResourceTestCase.set_up(self) # self.config.testing_securitypolicy("it") self._request.environ.update(create_extra_environ())
def tear_down(): Session.remove() assert not Session.registry.has() reset_metadata()
def tear_down(self): Session.remove() EntityTestCase.tear_down(self)
def tear_down(): Session.remove()
def tear_down(self): transaction.abort() Session.remove() FunctionalTestCase.tear_down(self)
def tear_down(self): Session.remove() ResourceTestCase.tear_down(self)
def __enter__(self): Session.remove()
def tear_down(self): Session.remove() ResourceTestCase.tear_down(self)
def tear_down(self): super(RdbTestCaseMixin, self).tear_down() Session.remove()
def tear_down(): Session.remove() assert not Session.registry.has() reset_metadata()
def tear_down(self): super(RdbTestCaseMixin, self).tear_down() Session.remove()
def tear_down(): Session.remove()
def __exit__(self, ext_type, value, tb): Session.remove()
def __enter__(self): Session.remove()
def __exit__(self, ext_type, value, tb): Session.remove()
def tear_down(self): transaction.abort() Session.remove() FunctionalTestCase.tear_down(self)
def __initialize_session(self): # Initializes a session for ORM operations. self.__session = ScopedSessionMaker()
def tear_down(self): Session.remove() EntityTestCase.tear_down(self)
def set_up(self): Session.remove() ResourceTestCase.set_up(self) # self.config.testing_securitypolicy("it") self._request.environ.update(create_extra_environ())