def get_seq_range_bytes(self, name, start, stop):
pos, padding, size = self.starts[name]
if (stop >= size):
stop = size - 1
#raise IndexError("Stop index too large: " + str(stop))
if (start > stop):
raise IndexError("Start index larger or equal to stop index: " +
str(start) + ", " + str(stop))
if (start < 0):
raise IndexError("Indices must be >= zero: " + str(start))
start_byte = start / 4
end_byte = stop / 4
byte_len = end_byte - start_byte + 1
f = open(self.file, "rb")
f.seek(pos + start_byte, 0)
s = f.read(byte_len)
f.close()
bytes = list(struct.unpack(">" + str(byte_len) + "B", s))
return bytes
def fill_parameters(self, data):
""" Fill parameters with the provided data
@param data: dictionnary with parameter name as key, and a dictionnary of {key: value} entries to fill the parameter
@return True if the filling has been done
@raise IndexError when provided name is not registered as a Parameter name
@raise ValueError when parameter has not been correctly filled with provided values.
Note that this exception has to be raised by the Parameter
"""
for name in data:
if name not in self._parameters:
raise IndexError("Name " + name +
"is not in known parameters for this test")
else:
self._parameters[name].fill(data[name])
def get_by_index(self, i, j):
if not self.are_indices_in_range(i, j):
raise IndexError()
return self.map.data[i * self.width + j]
def __getitem__(self, pos):
if 0 <= pos[0] < self.rows and 0 <= pos[1] < self.cols:
return self.data[pos[0]][pos[1]]
else:
raise IndexError("Index out of bounds ( %d, %d )" %
(pos[0], pos[1]))
def __setitem__(self, pos, v):
if 0 <= pos[0] < self.rows and 0 <= pos[1] < self.cols:
self.data[pos[0]][pos[1]] = v
else:
raise IndexError("Index out of bounds ( %d, %d )" %
(pos[0], pos[1]))
change_location(myConn, snid, site, location)
if __name__ == "__main__":
data_dir = "/sps/lsst/DataBE/ASPIC_production/"
archive_dir = "/lsst-fr/data/camera/ASPIC_data"
print 'running script %s ...' % sys.argv[0]
print 'data_dir is ', data_dir
print 'archive_dir is ', archive_dir
try:
chips = sys.argv[1]
except IndexError:
raise IndexError(
'chip idea input (e.g. 0001 or 01* or a file with chip ids) needs to be provided'
)
if len(sys.argv) == 2:
move_to = 'CCIN2P3/Cabinet'
else:
move_to = sys.argv[2]
chipdirs, site, location = input_parsing(chips, move_to=move_to)
#need to clean the list of usable logs
logdir = os.path.join(data_dir, 'Logs')
logfiles = glob.glob(os.path.join(logdir, "log-*.txt"))
logfiles = filter(
lambda x: (not 'try' in x) and (not 'Test' in x) and (
('PreScreening' in x) or ('PostScreening' in x) or
def get_by_index(self, i, j): if not self.are_indices_within_map(i, j): raise IndexError() return self.data[i*self.width + j]