def parse_record(self, row: Dict[str, Any]) -> FileEntity:
# bezerk mode doesn't make sense for this importer
assert self.bezerk_mode is False
file_ident = uuid2fcid(row["file_ident"])
wrong_release_ident = uuid2fcid(row["wrong_release_ident"])
edit_extra = row["edit_extra"]
assert edit_extra["link_source"] in ["unpaywall", "doi"]
file_edit_doi = clean_doi(edit_extra["link_source_id"])
if not file_edit_doi:
self.counts["skip-bad-doi"] += 1
return False
# check that the "wrong" release exists and doesn't have the DOI
wrong_release = None
try:
wrong_release = self.api.get_release(wrong_release_ident)
except fatcat_openapi_client.rest.ApiException as err:
if err.status != 404:
raise err
if not wrong_release:
self.counts["skip-wrong-release-missing"] += 1
return None
if clean_doi(wrong_release.ext_ids.doi) == file_edit_doi:
self.counts["skip-wrong-release-is-ok"] += 1
return None
# fetch the "correct" release, if any
fixed_release_ids = []
correct_release = None
try:
correct_release = self.api.lookup_release(doi=file_edit_doi)
except fatcat_openapi_client.rest.ApiException as err:
if err.status != 404:
raise err
if correct_release:
fixed_release_ids.append(correct_release.ident)
fe = FileEntity(
ident=file_ident,
release_ids=fixed_release_ids,
edit_extra=edit_extra,
)
fe._wrong_release_ident = wrong_release_ident
return fe
def run_export_releases(args):
for line in args.ident_file:
ident = uuid2fcid(line.split()[0])
release = args.api.get_release(ident=ident, expand="all")
args.json_output.write(
json.dumps(entity_to_dict(release), api_client=args.api.api_client)
+ "\n")
def run_uuid2fcid(args):
print(uuid2fcid(args.uuid))
def run_uuid2fcid(args: argparse.Namespace) -> None:
print(uuid2fcid(args.uuid))