def fit(model: Module, optimiser: Optimizer, loss_fn: Callable, epochs: int, dataloader: DataLoader,
prepare_batch: Callable, metrics: List[Union[str, Callable]] = None, callbacks: List[Callback] = None,
verbose: bool =True, fit_function: Callable = gradient_step, fit_function_kwargs: dict = {}):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
loss_fn: Loss function to calculate between predictions and outputs
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
fit_function: Function for calculating gradients. Leave as default for simple supervised training on labelled
batches. For more complex training procedures (meta-learning etc...) you will need to write your own
fit_function
fit_function_kwargs: Keyword arguments to pass to `fit_function`
"""
# Determine number of samples:
num_batches = len(dataloader)
batch_size = dataloader.batch_size
callbacks = CallbackList([DefaultCallback(), ] + (callbacks or []) + [ProgressBarLogger(), ])
callbacks.set_model(model)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch':prepare_batch,
'loss_fn': loss_fn,
'optimiser': optimiser
})
if verbose:
print('Begin training...')
callbacks.on_train_begin()
for epoch in range(1, epochs+1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
for batch_index, batch in enumerate(dataloader):
batch_logs = dict(batch=batch_index, size=64)
callbacks.on_batch_begin(batch_index, batch_logs)
x, y = prepare_batch(batch)
loss, y_pred = fit_function(model, optimiser, loss_fn, x, y, **fit_function_kwargs)
batch_logs['loss'] = loss.item()
# Loops through all metrics
batch_logs = batch_metrics(model, y_pred, y, metrics, batch_logs)
callbacks.on_batch_end(batch_index, batch_logs)
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()
def fit(model: Module,
optimiser: Optimizer,
loss_fn: Callable,
epochs: int,
dataloader: DataLoader,
writer: SummaryWriter,
prepare_batch: Callable,
metrics: List[Union[str, Callable]] = None,
callbacks: List[Callback] = None,
verbose: bool = True,
fit_function: Callable = gradient_step,
stnmodel=None,
stnoptim=None,
args=None,
fit_function_kwargs: dict = {}):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
loss_fn: Loss function to calculate between predictions and outputs
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
writer: `tensorboard.SummaryWriter` instance to write plots to tensorboard
prepare_batch: Callable to perform any desired preprocessing
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
fit_function: Function for calculating gradients. Leave as default for simple supervised training on labelled
batches. For more complex training procedures (meta-learning etc...) you will need to write your own
fit_function
fit_function_kwargs: Keyword arguments to pass to `fit_function`
"""
# Determine number of samples:
num_batches = len(dataloader)
batch_size = dataloader.batch_size
callbacks = CallbackList([
DefaultCallback(),
] + (callbacks or []) + [
ProgressBarLogger(),
])
callbacks.set_model(model)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch': prepare_batch,
'loss_fn': loss_fn,
'optimiser': optimiser
})
if verbose:
print('Begin training...')
callbacks.on_train_begin()
for epoch in range(1, epochs + 1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
for batch_index, batch in enumerate(dataloader):
batch_logs = dict(batch=batch_index, size=(batch_size or 1))
callbacks.on_batch_begin(batch_index, batch_logs)
x, y = prepare_batch(batch)
fit_function_kwargs['stnmodel'] = stnmodel
fit_function_kwargs['stnoptim'] = stnoptim
fit_function_kwargs['args'] = args
n_shot = fit_function_kwargs['n_shot']
k_way = fit_function_kwargs['k_way']
loss, y_pred, aug_imgs = fit_function(model, optimiser, loss_fn, x,
y, **fit_function_kwargs)
batch_logs['loss'] = loss.item()
# Useful for viewing images for debugging (Doesn't work for maml)
#TODO (kamal): customize for maml
# if batch_index % 100 == 99:
# writer.add_figure('episode', plot_classes_preds(aug_imgs, n_shot, k_way),
# global_step=len(dataloader)*(epoch-1) + batch_index)
# Loops through all metrics
batch_logs = batch_metrics(model, y_pred, y, metrics, batch_logs)
# Log training loss and categorical accuracy
writer.add_scalar('Train_loss', batch_logs['loss'],
len(dataloader) * (epoch - 1) + batch_index)
writer.add_scalar('categorical_accuracy',
batch_logs['categorical_accuracy'],
len(dataloader) * (epoch - 1) + batch_index)
callbacks.on_batch_end(batch_index, batch_logs)
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()
def fit(model: Union[Module, List[Module]],
optimiser: Optimizer,
loss_fn: Callable,
epochs: int,
dataloader: DataLoader,
prepare_batch: Callable,
metrics: List[Union[str, Callable]] = None,
callbacks: List[Callback] = None,
verbose: bool = True,
fit_function: Callable = gradient_step,
n_models: int = 1,
fit_function_kwargs: dict = {}):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
loss_fn: Loss function to calculate between predictions and outputs
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
prepare_batch: Callable to perform any desired preprocessing
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
fit_function: Function for calculating gradients. Leave as default for simple supervised training on labelled
batches. For more complex training procedures (meta-learning etc...) you will need to write your own
fit_function
fit_function_kwargs: Keyword arguments to pass to `fit_function`
"""
# Determine number of samples:
num_batches = len(dataloader)
batch_size = dataloader.batch_size
fit_function_kwargs_logs = dict(fit_function_kwargs)
fit_function_kwargs_logs['train'] = False
fit_function_kwargs_logs['pred_fn'] = logmeanexp_preds
callbacks = CallbackList([
DefaultCallback(),
] + (callbacks or []) + [
ProgressBarLogger(),
])
callbacks.set_model(model)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch': prepare_batch,
'loss_fn': loss_fn,
'optimiser': optimiser,
'n_models': n_models
})
if verbose:
print('Begin training...')
callbacks.on_train_begin()
for epoch in range(1, epochs + 1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
for batch_index, batch in enumerate(dataloader):
batch_logs = dict(batch=batch_index, size=(batch_size or 1))
callbacks.on_batch_begin(batch_index, batch_logs)
x, y = prepare_batch(batch)
# result = {
# "meta_batch_loss": meta_batch_loss,
# "task_predictions": task_predictions,
# "models_losses": models_losses,
# "models_predictions": models_predictions,
# "mean_support_loss": mean_support_loss
# }
result = fit_function(model, optimiser, loss_fn, x, y,
**fit_function_kwargs)
loss = result['meta_batch_loss']
y_pred = result['task_predictions']
models_losses = result['models_losses']
models_preds = result['models_predictions']
support_loss = result['mean_support_loss']
batch_logs['loss'] = loss.item()
batch_logs['support_loss'] = support_loss
# Loops through all metrics
batch_logs = batch_metrics(model, y_pred, y, metrics, batch_logs)
task_preds = defaultdict(list)
for model_pred in models_preds:
for i, task in enumerate(model_pred):
task_preds[i].append(task)
# task_preds : {task_idx : [model_1_pred, model_2_pred, ....] }
logprobs_pred = []
logprobs_loss = []
for task_idx, task_pred in task_preds.items():
y_pred_ = logmeanexp_preds(task_pred)
logprobs_pred.append(y_pred_)
y_pred_logprobs = torch.cat(logprobs_pred)
# TODO: make it work with MixturePredLoss
# with torch.no_grad():
# loss_logprobs = loss_fn(y_pred_logprobs, y).item()
#
# batch_logs['logprobs_loss'] = loss_logprobs
batch_logs['logprobs_nll'] = nll_loss(y_pred_logprobs,
y,
reduction="mean").item()
batch_logs = batch_metrics(model, y_pred_logprobs, y, metrics,
batch_logs, 'logprobs')
for i, (loss, y_pred) in enumerate(zip(models_losses,
models_preds)):
batch_logs[f'loss_{i}'] = nmean(loss)
batch_logs[f'categorical_accuracy_{i}'] = NAMED_METRICS[
'categorical_accuracy'](y, torch.cat(y_pred))
callbacks.on_batch_end(batch_index, batch_logs)
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()
def fit(model: Module, optimiser: Optimizer, loss_fn: Callable, epochs: int, dataloader: DataLoader,
prepare_batch: Callable, metrics: List[Union[str, Callable]] = None, callbacks: List[Callback] = None,
verbose: bool =True, fit_function: Callable = gradient_step, fit_function_kwargs: dict = {}):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
loss_fn: Loss function to calculate between predictions and outputs
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
prepare_batch: Callable to perform any desired preprocessing
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
fit_function: Function for calculating gradients. Leave as default for simple supervised training on labelled
batches. For more complex training procedures (meta-learning etc...) you will need to write your own
fit_function
fit_function_kwargs: Keyword arguments to pass to `fit_function`
"""
# Determine number of samples:
num_batches = len(dataloader)
batch_size = dataloader.batch_size
# default call back averages the bach accuracy and loss
callbacks = CallbackList([DefaultCallback(), ] + (callbacks or []) + [ProgressBarLogger(), ])
# model and all other information has been passed to call back nothing else ot be done during function calls
callbacks.set_model(model)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch': prepare_batch,
'loss_fn': loss_fn,
'optimiser': optimiser
})
if verbose:
print('Begin training...')
# creates a csv logger file
callbacks.on_train_begin()
for epoch in range(1, epochs+1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
for batch_index, batch in enumerate(dataloader):
# for each new batch create a batch_log
batch_logs = dict(batch=batch_index, size=(batch_size or 1))
# this does nothing for protonets except the progress bar
callbacks.on_batch_begin(batch_index, batch_logs)
# y here is of shape queries * k-way
# y is in [0, k]
x, y = prepare_batch(batch)
# what we expect here is a loss for the above batch and the probabolities of the classes predicted
# accuracy is determined on queries only
loss, y_pred = fit_function(model, optimiser, loss_fn, x, y, **fit_function_kwargs)
batch_logs['loss'] = loss.item()
# Loops through all metrics
# for each episode per epoch what is the accuracy that number of corrects / total number of queries
batch_logs = batch_metrics(model, y_pred, y, metrics, batch_logs)
# this does nothing protonets except the progess bar
# the categorical accuracy and loss we see during train refers to the queried samples accuracy
callbacks.on_batch_end(batch_index, batch_logs)
# evalfewshot is run only here after one complete epoch
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()
def fit_gan_few_shot(encoder: Module,
generator: Module,
classifier: Module,
discriminator: Module,
dataloader: DataLoader,
params_str: str,
k: int,
n: int,
epochs: int,
prepare_batch: Callable,
latent_sizeC: int,
latent_sizeB: int,
device,
e_optimizer: Optimizer,
g_optimizer: Optimizer,
c_optimizer: Optimizer,
d_optimizer: Optimizer,
metrics: List[Union[str, Callable]] = None,
callbacks: List[Callback] = None,
verbose: bool = True,
is_complete=True):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
prepare_batch: Callable to perform any desired preprocessing
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
"""
# Determine number of samples:
num_batches = len(dataloader)
batch_size = dataloader.batch_size
callbacks = CallbackList([
DefaultCallback(),
] + (callbacks or []) + [
ProgressBarLogger(),
])
class EncoderClassifier(nn.Module):
def forward(self, x):
c, v = encoder(x)
return classifier(c)
encoderclassifier = EncoderClassifier().to(device, dtype=torch.double)
callbacks.set_model(encoderclassifier)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch': prepare_batch,
'loss_fn': criterionClass
})
checkpoint_e = ModelCheckpoint(
filepath=os.path.join(PATH, 'models', 'semantic_gan',
str(params_str) + '_encoder.pth'),
monitor='val_' + str(n) + '-shot_' + str(k) + '-way_acc')
checkpoint_g = ModelCheckpoint(
filepath=os.path.join(PATH, 'models', 'semantic_gan',
str(params_str) + '_generator.pth'),
monitor='val_' + str(n) + '-shot_' + str(k) + '-way_acc')
checkpoint_c = ModelCheckpoint(
filepath=os.path.join(PATH, 'models', 'semantic_gan',
str(params_str) + '_classifier.pth'),
monitor='val_' + str(n) + '-shot_' + str(k) + '-way_acc')
checkpoint_d = ModelCheckpoint(
filepath=os.path.join(PATH, 'models', 'semantic_gan',
str(params_str) + '_discriminator.pth'),
monitor='val_' + str(n) + '-shot_' + str(k) + '-way_acc')
checkpoint_e.set_model(encoder)
checkpoint_g.set_model(generator)
checkpoint_c.set_model(classifier)
checkpoint_d.set_model(discriminator)
if verbose:
print('Begin training...')
callbacks.on_train_begin()
for epoch in range(1, epochs + 1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
for batch_index, batch in enumerate(dataloader):
batch_logs = dict(batch=batch_index, size=(batch_size or 1))
callbacks.on_batch_begin(batch_index, batch_logs)
x, y = prepare_batch(batch)
cl_loss, cl_score, dae_loss, ae_loss, cae_loss = gradient_step_gan_few_shot(
e_optimizer,
g_optimizer,
c_optimizer,
d_optimizer,
x,
y,
device,
encoder,
generator,
classifier,
discriminator,
latent_sizeB,
latent_sizeC,
epoch,
is_complete=is_complete)
batch_logs['cl_loss'] = cl_loss.item()
#batch_logs['d_loss'] = d_loss.item()
batch_logs['ae_loss'] = ae_loss.item()
batch_logs['cae_loss'] = cae_loss.item()
batch_logs['cl_score'] = cl_score.item()
#batch_logs['real_score'] = real_score.item()
#batch_logs['fake_score'] = fake_score.item()
if is_complete:
batch_logs['dae_loss'] = dae_loss.item()
callbacks.on_batch_end(batch_index, batch_logs)
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
checkpoint_e.on_epoch_end(epoch, epoch_logs)
checkpoint_c.on_epoch_end(epoch, epoch_logs)
checkpoint_g.on_epoch_end(epoch, epoch_logs)
checkpoint_d.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()
def fit(model: Module,
optimiser: Optimizer,
loss_fn: Callable,
epochs: int,
dataloader: DataLoader,
prepare_batch: Callable,
metrics: List[Union[str, Callable]] = None,
callbacks: List[Callback] = None,
verbose: bool = True,
fit_function: Callable = gradient_step,
fit_function_kwargs: dict = {}):
"""Function to abstract away training loop.
The benefit of this function is that allows training scripts to be much more readable and allows for easy re-use of
common training functionality provided they are written as a subclass of voicemap.Callback (following the
Keras API).
# Arguments
model: Model to be fitted.
optimiser: Optimiser to calculate gradient step from loss
loss_fn: Loss function to calculate between predictions and outputs
epochs: Number of epochs of fitting to be performed
dataloader: `torch.DataLoader` instance to fit the model to
prepare_batch: Callable to perform any desired preprocessing
metrics: Optional list of metrics to evaluate the model with
callbacks: Additional functionality to incorporate into training such as logging metrics to csv, model
checkpointing, learning rate scheduling etc... See voicemap.callbacks for more.
verbose: All print output is muted if this argument is `False`
fit_function: Function for calculating gradients. Leave as default for simple supervised training on labelled
batches. For more complex training procedures (meta-learning etc...) you will need to write your own
fit_function
fit_function_kwargs: Keyword arguments to pass to `fit_function`
"""
# Determine number of samples:
num_batches = len(dataloader)
print('num_batches: ', num_batches)
batch_size = dataloader.batch_size
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
callbacks = CallbackList([
DefaultCallback(),
] + (callbacks or []) + [
ProgressBarLogger(),
])
callbacks.set_model(model)
callbacks.set_params({
'num_batches': num_batches,
'batch_size': batch_size,
'verbose': verbose,
'metrics': (metrics or []),
'prepare_batch': prepare_batch,
'loss_fn': loss_fn,
'optimiser': optimiser
})
if verbose:
print('Begin training...')
callbacks.on_train_begin()
for epoch in range(1, epochs + 1):
callbacks.on_epoch_begin(epoch)
epoch_logs = {}
# train_iter = iter(dataloader)
# first_batch = next(train_iter)
# for obj in gc.get_objects():
# if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
# del obj
torch.cuda.empty_cache()
for batch_index, batch in enumerate(dataloader):
batch_logs = dict(batch=batch_index, size=(batch_size or 1))
callbacks.on_batch_begin(batch_index, batch_logs)
input_ids, attention_mask, label = prepare_batch(batch)
input_ids = torch.squeeze(input_ids, dim=1)
attention_mask = torch.squeeze(attention_mask, dim=1)
input_ids = input_ids.to(device)
attention_mask = attention_mask.to(device)
label = label.to(device)
# print('input_ids shape: ', input_ids.size())
# print('attention_mask shape: ', attention_mask.size())
# print('label shape: ', label.size())
# input_ids = input_ids[:8,:]
# attention_mask = attention_mask[:8,:]
# label = label[:8]
# print('input_ids shape: ', input_ids.size())
# print('attention_mask shape: ', attention_mask.size())
# print('label shape: ', label.size())
try:
print('Before Loss/Pred')
gpu_dict = get_gpu_info()
print('Total GPU Mem: {} , Used GPU Mem: {}, Used Percent: {}'.
format(gpu_dict['mem_total'], gpu_dict['mem_used'],
gpu_dict['mem_used_percent']))
except:
pass
loss, y_pred = fit_function(model, optimiser, loss_fn, input_ids,
attention_mask, label,
**fit_function_kwargs)
batch_logs['loss'] = loss.item()
try:
print('After Loss/Pred')
gpu_dict = get_gpu_info()
print('Total GPU Mem: {} , Used GPU Mem: {}, Used Percent: {}'.
format(gpu_dict['mem_total'], gpu_dict['mem_used'],
gpu_dict['mem_used_percent']))
except:
pass
# Loops through all metrics
batch_logs = batch_metrics(model, y_pred, label, metrics,
batch_logs)
callbacks.on_batch_end(batch_index, batch_logs)
# for obj in gc.get_objects():
# if torch.is_tensor(obj) or (hasattr(obj, 'data') and torch.is_tensor(obj.data)):
# del obj
torch.cuda.empty_cache()
# Run on epoch end
callbacks.on_epoch_end(epoch, epoch_logs)
# Run on train end
if verbose:
print('Finished.')
callbacks.on_train_end()