def set_identifier(self, puid, alternative):
"""Extends superclass for convenience
Set patient identifiers
Keyword arguments:
puid -- the puid/mrn
alternate -- alternate ids (SSN, etc)
"""
idents = []
if puid:
idents.append(
supermod.Identifier(use=supermod.IdentifierUse(value='usual'),
label=supermod.string(value='PUID'),
value=supermod.string(value=puid)))
for alt in alternative:
idents.append(
supermod.Identifier(
use=supermod.IdentifierUse(value='official'),
label=supermod.string(value=alt.alternative_id_type),
value=supermod.string(value=alt.code)))
if idents:
super(health_Patient, self).set_identifier(idents)
def set_identifier(self, observation, patient, date):
"""Extends superclass for convenience
Set the identifier from the data model
Keyword arguments:
observation -- the observation (Health model)
patient -- patient (Health model)
date -- date of observation (datetime object)
"""
if observation and patient:
if date is not None:
label = '{0} value for {1} on {2}'.format(
observation.name, patient.name.rec_name,
date.strftime('%Y/%m/%d'))
else:
label = '{0} value for {1} on unknown'.format(
observation.name, patient.name.rec_name)
if RUN_FLASK:
value = url_for('obs_record', log_id=observation.id)
else:
value = dumb_url_generate(['Observation', observation.id])
ident = supermod.Identifier(label=supermod.string(value=label),
value=supermod.string(value=value))
super(health_Observation, self).set_identifier(ident)
def set_identifier(self, identifier):
"""Extends superclass for convenience
Keyword arguments:
identifier -- puid
"""
if identifier:
ident = supermod.Identifier(
use=supermod.IdentifierUse(value='usual'),
label=supermod.string(value='PUID'),
value=supermod.string(value=identifier))
super(health_Practitioner, self).add_identifier(ident)
def set_identifier(self, identifier):
"""Extend superclass
Set the institution's identifier
Keyword arguments:
identifier - institution code
"""
if identifier is not None:
ident = supermod.Identifier(
use=supermod.IdentifierUse(value='official'),
label=supermod.string(value='Institution code'),
value=supermod.string(value=str(identifier)))
super(health_Organization, self).set_identifier([ident])
def set_identifier(self, report, patient, date):
"""Extends superclass for convenience
Keyword arguments:
report -- the report (Health model)
patient -- patient name
date -- the date (datetime object)
"""
if report and patient and date:
label = '{0} for {1} on {2}'.format(report.name, patient, date.strftime('%Y/%m/%d'))
if RUN_FLASK:
value = url_for('dr_record', log_id=report.id)
else:
value = dumb_url_generate(['DiagnosticReport', report.id])
ident = supermod.Identifier(
label=supermod.string(value=label),
value=supermod.string(value=value))
super(health_DiagnosticReport, self).set_identifier(ident)
def set_identifier(self, patient, procedure, date):
"""Extends superclass for convenience
Keyword arguments:
patient -- patient name
procedure -- procedure (Health model)
date -- date (datetime object)
"""
if procedure and patient and date:
if RUN_FLASK:
value = supermod.string(
value=url_for('op_record', log_id=self.procedure.id))
else:
value = supermod.string(
value=dumb_url_generate(['Procedure', self.procedure.id]))
ident = supermod.Identifier(label=supermod.string(
value='{0} performed on {1} on {2}'.format(
procedure.rec_name, patient, date.strftime('%Y/%m/%d'))),
value=value)
super(health_Procedure, self).add_identifier(ident)