def index(request):
indexpage = get_template('index.html')
# Declare global variables that may be modified here
global Global_PATIENT_ID
global Global_ADHERE_VARS
smart = client.FHIRClient(state=request.session['client_state'])
record_change_p = True
patientID = smart.patient_id
# Get the medication dispenses for this context
dispenses = MedicationDispense.where({'patient': patientID}).perform(smart.server)
pills = []
if dispenses.entry:
for dispense in dispenses.entry:
d = dispense.resource
name = d.medicationCodeableConcept.coding[0].display
assert d.status == 'completed'
quant = d.daysSupply.value
when = d.whenHandedOver.isostring
pills.append((None,name,quant,when))
birthday, patient_name = get_birthday_name(smart)
drug = 'all'
# We only want to call the adherence_check once for a specific patient
if Global_PATIENT_ID == patientID:
meds_flags, gaps, refill_data, refill_day = Global_ADHERE_VARS
else:
tests = adherenceTests.AdherenceTests()
meds_flags, gaps, refill_data, refill_day = tests.allTests(pills, drug, birthday)
Global_ADHERE_VARS = [meds_flags, gaps, refill_data, refill_day] # save the data for future needs
Global_PATIENT_ID = patientID
# Medication information will be displayed by drug class. Here we
# sort all the patient's medications into drug classes defined
# in this application.
drug_class_array = {}
for n in range(len(meds_flags)):
drug_class_array[meds_flags[n][5]] = 1
sorted_drug_class_list = sorted(drug_class_array.keys())
# Send these variables to the page for rendering
variables = Context({
'head_title': u'Medication Adherence Monitor',
'patientID': patientID,
'meds_flags': meds_flags, # Contains all the data needed for tables and plotting
'media_root': settings.MEDIA_ROOT,
'patient_name': patient_name,
'drug_class_array': sorted_drug_class_list,
})
output = indexpage.render(variables)
response = HttpResponse(output)
return response
def index(request):
indexpage = get_template('index.html')
# Declare global variables that may be modified here
global Global_PATIENT_ID
global Global_ADHERE_VARS
smart = client.FHIRClient(state=request.session['client_state'])
record_change_p = True
patientID = smart.patient_id
# Get the medication dispenses for this context
dispenses = MedicationDispense.where({'patient': patientID}).perform(smart.server)
pills = []
if dispenses.entry:
for dispense in dispenses.entry:
d = dispense.resource
name = d.medicationCodeableConcept.coding[0].display
assert d.status == 'completed'
quant = d.daysSupply.value
when = d.whenHandedOver.isostring
pills.append((None,name,quant,when))
birthday, patient_name = get_birthday_name(smart)
drug = 'all'
# We only want to call the adherence_check once for a specific patient
if Global_PATIENT_ID == patientID:
meds_flags, gaps, refill_data, refill_day = Global_ADHERE_VARS
else:
tests = adherenceTests.AdherenceTests()
meds_flags, gaps, refill_data, refill_day = tests.allTests(pills, drug, birthday)
Global_ADHERE_VARS = [meds_flags, gaps, refill_data, refill_day] # save the data for future needs
Global_PATIENT_ID = patientID
# Medication information will be displayed by drug class. Here we
# sort all the patient's medications into drug classes defined
# in this application.
drug_class_array = {}
for n in range(len(meds_flags)):
drug_class_array[meds_flags[n][5]] = 1
sorted_drug_class_list = sorted(drug_class_array.keys())
# Send these variables to the page for rendering
variables = Context({
'head_title': u'Medication Adherence Monitor',
'patientID': patientID,
'meds_flags': meds_flags, # Contains all the data needed for tables and plotting
'media_root': settings.MEDIA_ROOT,
'patient_name': patient_name,
'drug_class_array': sorted_drug_class_list,
})
output = indexpage.render(variables)
response = HttpResponse(output)
return response
def risk(request):
""" This function creates data and serves detailed
information about adherence for specific medications."""
# Declare global variables that may be modified here
global Global_PATIENT_ID
global Global_ADHERE_VARS
# Get the name of the drug if a specific one was requested.
# The default is 'all' drugs.
drug = request.GET.get('drug', 'all')
# Current context information
smart = client.FHIRClient(state=request.session['client_state'])
# Get the medication dispenses for this context
dispenses = MedicationDispense.where({'patient': smart.patient_id}).perform(smart.server)
pills = []
if dispenses.entry:
for dispense in dispenses.entry:
d = dispense.resource
name = d.medicationCodeableConcept.coding[0].display
assert d.status == 'completed'
quant = d.daysSupply.value
when = d.whenHandedOver.isostring
pills.append((None,name,quant,when))
# The the fulfillment gap and MPR prediction data
meds_flags, gaps, refill_data, refill_day = Global_ADHERE_VARS
names = []
if drug == 'all': # get all the drugs for this patient
for pill in pills:
name = pill[1]
names.append(name)
d = pill[3]
else: # only use the specified drug name
meds_flags_new = []
names.append(drug)
for item in meds_flags:
if drug == item[0]:
meds_flags_new.append(item)
meds_flags = meds_flags_new
ad_data = []
med_names = []
for n in names:
d = {}
d["title"] = str(n)
med_names.append(n)
d["subtitle"] = 'adherence'
d["measures"] = [1.0]
ad_data.append(d)
drug_class_array = {}
for n in range(len(meds_flags)):
drug_class_array[meds_flags[n][5]] = 1
sorted_drug_class_array = sorted(drug_class_array.keys())
# Determine width and height of chart by the number of drugs to be shown
width = 400
height = 100
if len(names) == 1:
width = 500
height = 200
variables = RequestContext(request, {
'head_title': u'Predicted 1-year medication possession ratio (MPR)',
'med_names': med_names,
'meds_flags': meds_flags,
'refill_day': simplejson.dumps(refill_day),
'refill': simplejson.dumps(refill_data),
'gaps': simplejson.dumps(gaps),
'width': width,
'height': height,
'drug_class_array': sorted_drug_class_array,
})
response = render_to_response("risk.html", context_instance=variables )
return HttpResponse(response)
def risk(request):
""" This function creates data and serves detailed
information about adherence for specific medications."""
# Declare global variables that may be modified here
global Global_PATIENT_ID
global Global_ADHERE_VARS
# Get the name of the drug if a specific one was requested.
# The default is 'all' drugs.
drug = request.GET.get('drug', 'all')
# Current context information
smart = client.FHIRClient(state=request.session['client_state'])
# Get the medication dispenses for this context
dispenses = MedicationDispense.where({'patient': smart.patient_id}).perform(smart.server)
pills = []
if dispenses.entry:
for dispense in dispenses.entry:
d = dispense.resource
name = d.medicationCodeableConcept.coding[0].display
assert d.status == 'completed'
quant = d.daysSupply.value
when = d.whenHandedOver.isostring
pills.append((None,name,quant,when))
# The the fulfillment gap and MPR prediction data
meds_flags, gaps, refill_data, refill_day = Global_ADHERE_VARS
names = []
if drug == 'all': # get all the drugs for this patient
for pill in pills:
name = pill[1]
names.append(name)
d = pill[3]
else: # only use the specified drug name
meds_flags_new = []
names.append(drug)
for item in meds_flags:
if drug == item[0]:
meds_flags_new.append(item)
meds_flags = meds_flags_new
ad_data = []
med_names = []
for n in names:
d = {}
d["title"] = str(n)
med_names.append(n)
d["subtitle"] = 'adherence'
d["measures"] = [1.0]
ad_data.append(d)
drug_class_array = {}
for n in range(len(meds_flags)):
drug_class_array[meds_flags[n][5]] = 1
sorted_drug_class_array = sorted(drug_class_array.keys())
# Determine width and height of chart by the number of drugs to be shown
width = 400
height = 100
if len(names) == 1:
width = 500
height = 200
variables = RequestContext(request, {
'head_title': u'Predicted 1-year medication possession ratio (MPR)',
'med_names': med_names,
'meds_flags': meds_flags,
'refill_day': simplejson.dumps(refill_day),
'refill': simplejson.dumps(refill_data),
'gaps': simplejson.dumps(gaps),
'width': width,
'height': height,
'drug_class_array': sorted_drug_class_array,
})
response = render_to_response("risk.html", context_instance=variables )
return HttpResponse(response)