def fromPath(cls, basePath=".", machineName=None, param=None, origSpec=None, fitFunc=None, t=None, execTime=None):
if param == None:
dicaData = fileio.dicafile(os.path.join(basePath, "dica.dat")).read_data()
compData = fileio.compfile(os.path.join(basePath, "comp.ind")).read_data()
dica = paramMod.dica(dicaData, mode="fromPath", t=t)
comp = paramMod.comp(compData, t=dica["t"])
param = paramMod.param(initDica=dica, initComp=comp)
aSpecPath = os.path.join(basePath, "spct.dat")
try:
aSpec = spectrum(aSpecPath, usecols=(0, 2))
sbib = fileio.sbibfile(os.path.join(basePath, "sbib.dat")).read_data()
llist = sbib["llist"]
wParams = fileio.ststfile(os.path.join(basePath, "stst.dat")).getWParams()
specFlag = 0
except:
print "Creating fake Spectrum @%s" % basePath
aSpec = spectrum(zip(np.linspace(2000, 20000, 20), range(1, 21)))
sbib = {"llist": []}
llist = sbib["llist"]
wParams = []
specFlag = -1
log = list(file(os.path.join(basePath, "fica.log")))
# error=list(file(os.path.join(basePath,'error.log')))
if wParams != []:
w = wParams[-1][0][-1]
else:
w = -1
return cls(
aSpec,
param,
w,
machineName=None,
execTime=execTime,
wParam=wParams,
error=None,
ficaLog=log,
llist=llist,
origSpec=origSpec,
specFlag=specFlag,
fitFunc=fitFunc,
)
def printHist(dicaKeys=['log_lbol','v_ph'],compKeys=['Fe0','Fe','Ni0','Si','S','Cr','Ti','Mg'],max=10):
#dica=fileio.dicafile('dica.dat').read_data()
#comp=fileio.compfile('comp.ind').read_data()
#print comp
dicaStr=['%s=%s'%item for item in dica.items() if item[0] in dicaKeys]
compStr=['%s=%s'%item for item in comp.items() if item[0] in compKeys]
#print 'Current: '+' '.join(dicaStr+compStr)
#print '------------------------------------'
dicaFiles=glob('hist/dica.bak????')
compFiles=glob('hist/comp.bak????')
dicaFiles.sort()
compFiles.sort()
for dicaFile,compFile in zip(dicaFiles,compFiles)[::-1][:max]:
id=int(dicaFile[-4:])
dica=fileio.dicafile(dicaFile).read_data()
comp=fileio.compfile(compFile).read_data()
#print comp
dicaStr=['%s=%s'%item for item in dica.items() if item[0] in dicaKeys]
compStr=['%s=%s'%item for item in comp.items() if item[0] in compKeys]
print 'id=%s |'%id+' '.join(dicaStr+compStr)
def getPrevComp():
compFile=os.path.join(config.getLastMainDir(),'manual','comp.ind')
comp=param.comp(fileio.compfile(compFile).read_data())
return comp
def getHistComp(id):
compData=fileio.compfile('hist/comp.bak%04d'%id).read_data()
return param.comp(compData)
def write2file(self,fileName='comp.ind'):
fileio.compfile(fileName,'w').write_data(self.data)