def write_catalog(fname,
x,
y,
z,
w,
type="DATA",
format="fits",
coord="PSEUDO_EQUATORIAL"):
if format == "txt":
np.savetxt(fname, np.transpose([x, y, z, w]))
elif format == "fits":
# current DM supported
DM_VERSION = "2.5.0"
# Extracted from AsciiToFits.py written by Daniele Tavagnacco
if coord == "PSEUDO_EQUATORIAL":
columns = [['SOURCE_ID', -1, 'f8'], ['RA', x, 'f8'],
['DEC', y, 'f8'], ['REDSHIFT', z, 'f8'],
['WEIGHT', -1, 'f8'], ['DENSITY', w, 'f8']]
elif coord == "CARTESIAN":
columns = [['SOURCE_ID', -1, 'f8'], ['COMOV_X', x, 'f8'],
['COMOV_Y', y, 'f8'], ['COMOV_Z', z, 'f8'],
['WEIGHT', -1, 'f8'], ['DENSITY', w, 'f8']]
header_keywords = {
"TELESCOP": "EUCLID",
"INSTRUME": "LE3GC-MOCKS",
"FILENAME": fname,
"CAT_ID": "MOCK",
"COORD": coord,
"ANGLE": "DEGREES"
}
# fname_nodir = fname[[pos for pos, char in enumerate(fname) if char == '/'][-1]+1:]
# zshell = fname[fname.find('zshell'):-5]
# header_keywords = {'TELESCOP' : 'EUCLID ',
# 'INSTRUME' : 'LE3IDSELID',
# 'FILENAME' : fname_nodir,
# 'CAT_TYPE' : type,
# 'CAT_NAME' : 'MOCK-LE3GC',
# 'CAT_NOBJ' : x.size,
# 'COORD ' : 'EQUATORIAL',
# 'ANGLE ' : 'DEG ',
# 'COMPLETE' : 1.0,
# 'PURITY ' : 1.0,
# 'SELECT ' : zshell}
extension = "CATALOG"
xmlKeys = {
"pf": "PK_LE3_GC_WindowMultipoles",
"instr": "LE3_GC_MOCKS",
"id": "MOCK",
"coord": coord
}
print("Preparing FITS structure")
types = []
# keep just wanted columns ...bad but..
for c in columns:
types.append((c[0], c[2]))
hdr = FITSHDR()
print("+ Add keywords")
for k in header_keywords:
hdr[k] = header_keywords[k]
keep_table = {}
for c in columns:
# if required but not existing (-1) fill with ones
if (c[1] is -1):
# add tmp column with correct name and position, bu only ones
print(str("+ -Col '%s' filled" % c[0]))
keep_table[c[0]] = np.ones_like(columns[1][1],
dtype=np.float64)
else:
# keep column with requested position in the input file
print(str("+ -Col '%s' from '%s'" % (c[0], c[1])))
keep_table[c[0]] = c[1].astype(np.float64)
fullsize = len(keep_table) * len(c[1]) * 8 / 1024 / 1024.
print(str("+ ~%.2f MB in memory" % fullsize))
# now write some data
print(str("+ Write FITS: %s" % fname))
fits = FITS(fname, 'rw', clobber=True)
fits.write_table(data=keep_table, header=hdr, extname=extension)
fits.close()
print("+ Preparing XML product")
with open(fname.replace(input.cat4le3_format, "xml"), "w+") as f:
f.write(
'''<?xml version="1.0" encoding="UTF-8" standalone="no" ?>\n'''
)
if (type == "RANDOM"):
f.write(
'''<p1:DpdLE3gcInputRandCat xmlns:p1="http://euclid.esa.org/schema/dpd/le3/gc/inp/catrandin">\n'''
)
else:
f.write(
'''<p1:DpdLE3gcInputDataCat xmlns:p1="http://euclid.esa.org/schema/dpd/le3/gc/inp/catdatain">\n'''
)
f.write(''' <Header>\n''')
f.write(
str(''' <ProductId>%s</ProductId>\n''' %
header_keywords["FILENAME"].split('.')[0]))
f.write(
''' <ProductType>dpdLE3gcInputRandCat</ProductType>\n''')
f.write(''' <SoftwareName>LE3_GC_test</SoftwareName>\n''')
f.write(''' <SoftwareRelease>1.0</SoftwareRelease>\n''')
f.write(
''' <ManualValidationStatus>UNKNOWN</ManualValidationStatus>\n'''
)
f.write(''' <PipelineRun>LE3_GC_Test_Inputs</PipelineRun>\n''')
f.write(''' <ExitStatusCode>OK</ExitStatusCode>\n''')
f.write(
str(''' <DataModelVersion>%s</DataModelVersion>\n''' %
DM_VERSION))
f.write(
str(''' <MinDataModelVersion>%s</MinDataModelVersion>\n''' %
DM_VERSION))
f.write(''' <ScientificCustodian>LE3</ScientificCustodian>\n''')
f.write(''' <AccessRights>\n''')
f.write(
''' <EuclidConsortiumRead>true</EuclidConsortiumRead>\n'''
)
f.write(
''' <EuclidConsortiumWrite>true</EuclidConsortiumWrite>\n'''
)
f.write(
''' <ScientificGroupRead>true</ScientificGroupRead>\n''')
f.write(
''' <ScientificGroupWrite>true</ScientificGroupWrite>\n'''
)
f.write(''' </AccessRights>\n''')
f.write(''' <Curator>\n''')
f.write(''' <Name>SDC-IT</Name>\n''')
f.write(''' </Curator>\n''')
f.write(str(''' <Creator>%s</Creator>\n''' % xmlKeys["pf"]))
f.write(
''' <CreationDate>2019-10-31T12:12:12Z</CreationDate>\n''')
f.write(''' </Header>\n''')
f.write(''' <Data>\n''')
f.write(
str(''' <Instrument>%s</Instrument>\n''' % xmlKeys["instr"]))
f.write(str(''' <Catalog_ID>%s</Catalog_ID>\n''' % xmlKeys["id"]))
f.write(str(''' <CoordType>%s</CoordType>\n''' %
xmlKeys["coord"]))
f.write(''' <Catalog format="le3.gc.cat.test" version="0.2">\n''')
f.write(''' <DataContainer filestatus="PROPOSED">\n''')
f.write(str(''' <FileName>%s.fits</FileName>\n''' % fname))
f.write(''' </DataContainer>\n''')
f.write(''' </Catalog>\n''')
f.write(''' </Data>\n''')
if (type == "RANDOM"):
f.write('''</p1:DpdLE3gcInputRandCat>\n''')
else:
f.write('''</p1:DpdLE3gcInputDataCat>\n''')
f.close()
print("files %s and %s written" %
(fname, fname.replace(input.cat4le3_format, "xml")))
else:
print("ERROR: unrecognized format in write_catalog")
sys.exit(-1)
['cl_rand', cl_rand, 'f8']]
header_keywords = {}
types = []
# keep just wanted columns ...bad but..
for c in columns:
types.append((c[0], c[2]))
hdr = FITSHDR()
print("+ Add keywords")
for k in header_keywords:
hdr[k] = header_keywords[k]
keep_table = {}
for c in columns:
# keep column with requested position in the input file
print(str("+ -Col '%s'" % (c[0])))
keep_table[c[0]] = c[1] #.astype(np.float64)
fullsize = len(keep_table) * len(c[1]) * 8 / 1024 / 1024.
print(str("+ ~%.2f MB in memory" % fullsize))
fname = input.cls_fname(zmin, zmax, run=input.pinocchio_first_run)
print("## Writing FITS: %s" % fname)
fitsfile = FITS(fname, 'rw')
fitsfile.write_table(data=keep_table, header=hdr)
fitsfile.close()
print("# DONE!")