def visualize_ner_tags(self,
display_index=range(5),
save_display_html: bool = False,
save_all_html: bool = True,
**kwargs):
html = render_ner_html([self.sentences[i] for i in display_index],
**kwargs)
display(HTML(html))
if save_display_html:
(self.path / 'sentences_true_example.html').write_text(html)
if save_all_html:
html = render_ner_html(self.sentences, **kwargs)
(self.path / 'sentences_true_all.html').write_text(html)
def test_html_rendering():
text = ("Boris Johnson has been elected new Conservative leader in "
"a ballot of party members and will become the "
"next UK prime minister. &")
sentence = Sentence(text)
print(sentence[0:2].add_label("ner", "PER"))
print(sentence[6:7].add_label("ner", "MISC"))
print(sentence[19:20].add_label("ner", "LOC"))
colors = {
"PER": "#F7FF53",
"ORG": "#E8902E",
"LOC": "yellow",
"MISC": "#4647EB",
"O": "#ddd",
}
actual = render_ner_html([sentence], colors=colors)
expected_res = HTML_PAGE.format(
text=PARAGRAPH.format(
sentence=TAGGED_ENTITY.format(
color="#F7FF53", entity="Boris Johnson", label="PER") +
" has been elected new " + TAGGED_ENTITY.format(
color="#4647EB", entity="Conservative", label="MISC") +
" leader in a ballot of party members and will become the next " +
TAGGED_ENTITY.format(color="yellow", entity="UK", label="LOC") +
" prime minister. &"),
title="Flair",
)
assert expected_res == actual
def test_html_rendering():
text = (
"Boris Johnson has been elected new Conservative leader in a ballot of party members and will become the "
"next UK prime minister. &")
sent = Sentence()
sent.get_spans = MagicMock()
sent.get_spans.return_value = [
mock_ner_span(text, "PER", 0, 13),
mock_ner_span(text, "MISC", 35, 47),
mock_ner_span(text, "LOC", 109, 111),
]
sent.to_original_text = MagicMock()
sent.to_original_text.return_value = text
colors = {
"PER": "#F7FF53",
"ORG": "#E8902E",
"LOC": "yellow",
"MISC": "#4647EB",
"O": "#ddd",
}
actual = render_ner_html([sent], colors=colors)
expected_res = HTML_PAGE.format(
text=PARAGRAPH.format(
sentence=TAGGED_ENTITY.format(
color="#F7FF53", entity="Boris Johnson", label="PER") +
" has been elected new " + TAGGED_ENTITY.format(
color="#4647EB", entity="Conservative", label="MISC") +
" leader in a ballot of party members and will become the next " +
TAGGED_ENTITY.format(color="yellow", entity="UK", label="LOC") +
" prime minister. &"),
title="Flair",
)
assert expected_res == actual
def main(data_folder: str, output_folder: str, model_folder: str) -> None:
nlp: Language = spacy.blank('fr')
nlp.tokenizer = get_tokenizer(nlp)
tokenizer = build_spacy_tokenizer(nlp)
filenames = [
filename for filename in os.listdir(data_folder)
if filename.endswith(".txt")
]
tagger: SequenceTagger = SequenceTagger.load(
os.path.join(model_folder, 'best-model.pt'))
for filename in tqdm(iterable=filenames,
unit=" txt",
desc="anonymize cases"):
with open(os.path.join(data_folder, filename), 'r') as input_f:
sentences = tagger.predict(sentences=input_f.readlines(),
mini_batch_size=32,
verbose=False,
use_tokenizer=tokenizer)
case_name = filename.split('.')[0]
page_html = render_ner_html(sentences,
colors=colors,
title=case_name)
with open(os.path.join(output_folder, case_name + ".html"),
"w") as output:
output.write(page_html)
def predict(self,
sentences: Union[str, Sentence, List[Sentence], List[str]],
display_html: bool = True,
html_file: str = None,
display_str: bool = False,
**kwargs):
if type(sentences) == Sentence:
sentences = [sentences]
elif type(sentences) == str:
sentences = split_single(sentences)
if type(sentences[0]) == str:
sentences = [Sentence(s, use_tokenizer=True) for s in sentences]
self.model.predict(sentences)
if display_html or html_file:
html = render_ner_html(sentences, **kwargs)
if display_html:
display(HTML(html))
if html_file:
(self.path / html_file).write_text(html)
if display_str:
for sentence in sentences:
print(sentence.to_tagged_string())
def main(data_folder: str, model_folder: str, top_n: int) -> None:
print(f"keep only top {top_n} examples per file")
nlp: Language = spacy.blank('fr')
nlp.tokenizer = get_tokenizer(nlp)
tokenizer = build_spacy_tokenizer(nlp)
filenames = [
filename for filename in os.listdir(data_folder)
if filename.endswith(".xml")
]
sentences: List[Sentence] = list()
with tqdm(total=len(filenames), unit=" XML",
desc="Parsing XML") as progress_bar:
for filename in filenames:
paragraphs: List[Paragraph] = get_paragraph_from_file(
path=os.path.join(data_folder, filename),
keep_paragraph_without_annotation=True)
if len(paragraphs) > top_n:
for paragraph in paragraphs[:top_n]:
if len(paragraph.text) > 0:
s = Sentence(text=paragraph.text, tokenizer=tokenizer)
sentences.append(s)
progress_bar.update()
if len(sentences) == 0:
raise Exception(
"No example loaded, causes: no cases in provided path or sample size is to high"
)
tagger: SequenceTagger = SequenceTagger.load(
os.path.join(model_folder, 'best-model.pt'))
_ = tagger.predict(sentences=sentences,
mini_batch_size=32,
verbose=True,
embedding_storage_mode="cpu")
print("prepare html")
page_html = render_ner_html(sentences, colors=colors)
print("write html")
with open("sentence.html", "w") as writer:
writer.write(page_html)
def predict_flair(model, text):
manual_sentence = Sentence(manual_user_input)
model.predict(manual_sentence)
return render_ner_html(manual_sentence, colors=colors, wrap_page=False)
# not the first one, put empty
word.text = ""
inside_parenthesis = True
elif tag != "O" and not any([True for i in to_skip if i in tag]):
inside_parenthesis = False
if word.text.lower() not in replacement_dict:
replacement_dict[word.text.lower()] = pseudo[len(replacement_dict)]
word.text = replacement_dict[word.text.lower()]
else:
inside_parenthesis = False
colors = {
"ETABLISSEMENT": "#35c2b2",
"ADDRESS": "#FFAE62",
"ORGANIZATION": "#FFB990",
"SITE": "#ff8800",
"HOPITAL": "#edddcb",
"MEDIA": "#e966c4",
"MAIL": "#1688cb",
"ETAT": "#00c5ed",
"RESIDENCE": "#94bce1",
"PERSONNE_DE_JUSTICE": "#89B2C4",
"GROUPE": "#9cae64",
"DATE": "#F9E17D",
"NUMEROS": "#F8485E",
"PERS": "#FA7268",
"FONDS": "#C3FF1F",
}
st.write(render_ner_html(sentences=paragraphs, colors=colors, wrap_page=False), unsafe_allow_html=True)
