Exemple #1
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    def __init__(self, atoms, timestep=None, trajectory=None, dt=None, 
                 **kwargs):

        VelocityVerlet.__init__(self, atoms, timestep, trajectory, dt=dt)

        OTF.__init__(self, **kwargs)
        
        self.md_engine = 'VelocityVerlet'
Exemple #2
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    def __init__(self, atoms, timestep=None, temperature=None, friction=None, 
                 trajectory=None, **kwargs):

        Langevin.__init__(self, atoms, timestep, temperature, friction)

        OTF.__init__(self, **kwargs)
        
        self.md_engine = 'Langevin'
Exemple #3
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    def __init__(self, atoms, timestep, temperature, taut, fixcm=True,
                 trajectory=None, **kwargs):

        NVTBerendsen.__init__(self, atoms, timestep, temperature, taut, 
                              fixcm, trajectory)
 
        OTF.__init__(self, **kwargs)

        self.md_engine = 'NVTBerendsen'
Exemple #4
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    def __init__(self, atoms, timestep, temperature, externalstress, 
            ttime, pfactor, mask=None, trajectory=None, **kwargs):

        NPT.__init__(self, atoms, timestep, temperature,
                     externalstress, ttime, pfactor, mask,
                     trajectory)

        OTF.__init__(self, **kwargs)

        self.md_engine = 'NPT'
Exemple #5
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    def __init__(self, atoms, timestep, temperature, taut=0.5e3,
                 pressure=1.01325, taup=1e3,
                 compressibility=4.57e-5, fixcm=True, trajectory=None,
                 **kwargs):

        NPTBerendsen.__init__(self, atoms, timestep, temperature, taut,
                              pressure, taup,
                              compressibility, fixcm, trajectory)

        OTF.__init__(self, **kwargs)

        self.md_engine = 'NPTBerendsen'