def __call__(self, input_ids, token_type_ids, position_ids, attention_mask, deterministic: bool = True):
# Embed
w_emb = FlaxRobertaEmbedding(
self.vocab_size,
self.hidden_size,
kernel_init_scale=self.kernel_init_scale,
name="word_embeddings",
dtype=self.dtype,
)(jnp.atleast_2d(input_ids.astype("i4")))
p_emb = FlaxRobertaEmbedding(
self.max_length,
self.hidden_size,
kernel_init_scale=self.kernel_init_scale,
name="position_embeddings",
dtype=self.dtype,
)(jnp.atleast_2d(position_ids.astype("i4")))
t_emb = FlaxRobertaEmbedding(
self.type_vocab_size,
self.hidden_size,
kernel_init_scale=self.kernel_init_scale,
name="token_type_embeddings",
dtype=self.dtype,
)(jnp.atleast_2d(token_type_ids.astype("i4")))
# Sum all embeddings
summed_emb = w_emb + jnp.broadcast_to(p_emb, w_emb.shape) + t_emb
# Layer Norm
layer_norm = FlaxRobertaLayerNorm(name="layer_norm", dtype=self.dtype)(summed_emb)
embeddings = nn.Dropout(rate=self.dropout_rate)(layer_norm, deterministic=deterministic)
return embeddings
def __call__(self, inputs, deterministic):
"""Applies Encoder1DBlock module.
Args:
inputs: input data.
deterministic: if true dropout is applied otherwise not.
Returns:
output after transformer encoder block.
"""
cfg = self.config
# Attention block.
assert inputs.ndim == 3
x = nn.LayerNorm(dtype=cfg.dtype)(inputs)
x = nn.SelfAttention(num_heads=cfg.num_heads,
dtype=cfg.dtype,
qkv_features=cfg.qkv_dim,
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init,
use_bias=False,
broadcast_dropout=False,
dropout_rate=cfg.attention_dropout_rate,
deterministic=deterministic)(x)
x = nn.Dropout(rate=cfg.dropout_rate)(x, deterministic=deterministic)
x = x + inputs
# MLP block.
y = nn.LayerNorm(dtype=cfg.dtype)(x)
y = MlpBlock(config=cfg)(y, deterministic=deterministic)
return x + y
def __call__(self, inputs, decoder_mask=None, encoder_decoder_mask=None):
"""Applies EncoderDecoder1DBlock module.
Args:
inputs: input data for decoder
decoder_mask: decoder self-attention mask.
encoder_decoder_mask: encoder-decoder attention mask.
Returns:
output after transformer encoder-decoder block.
"""
config = self.config
# Decoder block.
assert inputs.ndim == 3
x = nn.LayerNorm(dtype=config.dtype)(inputs)
x = nn.SelfAttention(num_heads=config.num_heads,
dtype=config.dtype,
qkv_features=config.qkv_dim,
kernel_init=config.kernel_init,
bias_init=config.bias_init,
use_bias=False,
broadcast_dropout=False,
dropout_rate=config.attention_dropout_rate,
deterministic=config.deterministic,
decode=config.decode)(x, decoder_mask)
x = nn.Dropout(rate=config.dropout_rate)(
x, deterministic=config.deterministic)
x = x + inputs
# MLP block.
z = nn.LayerNorm(dtype=config.dtype)(x)
z = MlpBlock(config=config)(z)
return x + z
def setup(self):
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def setup(self) -> None:
self.head_dim = self.embed_dim // self.num_heads
if self.head_dim * self.num_heads != self.embed_dim:
raise ValueError(
f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} "
"and `num_heads`: {self.num_heads}).")
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=self.bias,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.init_std),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.dropout_layer = nn.Dropout(rate=self.dropout)
if self.causal:
self.causal_mask = make_causal_mask(jnp.ones(
(1, self.config.max_position_embeddings), dtype="bool"),
dtype="bool")
def __call__(self, inputs, is_training: bool):
x = nn.LayerNorm(dtype=self.dtype)(inputs)
x = SelfAttentionBlock(num_heads=self.num_heads,
head_ch=self.head_ch,
out_ch=self.num_heads * self.head_ch,
dropout_rate=self.attn_dropout_rate,
dtype=self.dtype,
precision=self.precision,
kernel_init=self.kernel_init)(
x, is_training=is_training)
x = nn.Dropout(rate=self.dropout_rate)(x,
deterministic=not is_training)
x += inputs
y = nn.LayerNorm(dtype=self.dtype)(x)
y = FFBlock(expand_ratio=self.expand_ratio,
dropout_rate=self.dropout_rate,
dtype=self.dtype,
precision=self.precision,
kernel_init=self.kernel_init,
bias_init=self.bias_init)(y, train=is_training)
output = x + y
return output
def __call__(self, feat, lengths):
"""
Compute Pooling by Multihead Attention.
Parameters
----------
feat : torch.Tensor
The input feature.
lengths : list
The array of node numbers, used to segment feat tensor.
Returns
-------
torch.Tensor
The output feature
"""
batch_size = len(lengths)
query = self.seed_vectors.repeat(batch_size, axis=0)
ffn_feat = nn.Dense(self.d_model)(
nn.relu(
nn.Dropout(self.dropouth)(
nn.Dense(self.d_ff)(feat)
)
)
)
return self.mha(query, ffn_feat, [self.k] * batch_size, lengths)
def __call__(self, *, inputs, train):
"""Applies Transformer model on the inputs.
Args:
inputs: input data
train: if it is training.
Returns:
output of a transformer decoder.
"""
padding_mask = jnp.where(inputs > 0, 1, 0).astype(jnp.float32)[...,
None]
assert inputs.ndim == 2 # (batch, len)
cfg = self.config
x = inputs.astype('int32')
x = nn.Embed(num_embeddings=cfg.vocab_size,
features=cfg.emb_dim,
name='embed')(x)
x = nn.Dropout(rate=cfg.dropout_rate)(x, deterministic=not train)
x = AddPositionEmbs(cfg)(x)
for l in range(cfg.num_layers):
x = Encoder1DBlock(cfg)(x, deterministic=not train)
x = nn.LayerNorm(dtype=cfg.dtype)(x)
logits = nn.Dense(cfg.output_vocab_size,
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init)(x)
return logits
def setup(self):
if self.config.hidden_size % self.config.num_attention_heads != 0:
raise ValueError(
"`config.hidden_size`: {self.config.hidden_size} has to be a multiple of `config.num_attention_heads`\
: {self.config.num_attention_heads}")
self.query = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
self.config.initializer_range),
)
self.key = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
self.config.initializer_range),
)
self.value = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
self.config.initializer_range),
)
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(
self.config.initializer_range),
dtype=self.dtype,
)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps,
dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def setup(self):
self.electra = FlaxElectraModule(config=self.config, dtype=self.dtype)
classifier_dropout = (self.config.classifier_dropout
if self.config.classifier_dropout is not None
else self.config.hidden_dropout_prob)
self.dropout = nn.Dropout(classifier_dropout)
self.classifier = nn.Dense(self.config.num_labels, dtype=self.dtype)
def setup(self):
config = self.config
self.embed_dim = config.hidden_size
self.num_heads = config.num_attention_heads
self.head_dim = self.embed_dim // self.num_heads
self.rotary_dim = config.rotary_dim
dense = partial(
nn.Dense,
self.embed_dim,
use_bias=False,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
self.config.initializer_range),
)
self.q_proj, self.k_proj, self.v_proj = dense(), dense(), dense()
self.out_proj = dense()
self.resid_dropout = nn.Dropout(rate=config.resid_pdrop)
self.causal_mask = make_causal_mask(jnp.ones(
(1, config.max_position_embeddings), dtype="bool"),
dtype="bool")
pos_embd_dim = self.rotary_dim or self.embed_dim
self.embed_positions = create_sinusoidal_positions(
config.max_position_embeddings, pos_embd_dim)
def setup(self):
self.n_heads = self.config.n_heads
self.dim = self.config.dim
self.dropout = nn.Dropout(rate=self.config.attention_dropout)
if not (self.dim % self.n_heads == 0):
raise ValueError(
f"Hidden size {self.dim} not dividable by number of heads {self.n_heads}"
)
self.q_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
)
self.k_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
)
self.v_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
)
self.out_lin = nn.Dense(
self.dim,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
)
def setup(self):
self.dense = nn.Dense(self.config.hidden_size, dtype=self.dtype)
classifier_dropout = (self.config.classifier_dropout
if self.config.classifier_dropout is not None
else self.config.hidden_dropout_prob)
self.dropout = nn.Dropout(classifier_dropout)
self.out_proj = nn.Dense(self.config.num_labels, dtype=self.dtype)
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
self.classifier = nn.Dense(
self.config.num_labels,
dtype=self.dtype,
)
def setup(self):
self.word_embeddings = nn.Embed(
self.config.vocab_size,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
dtype=self.dtype,
)
self.position_embeddings = nn.Embed(
self.config.max_position_embeddings,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
dtype=self.dtype,
)
self.token_type_embeddings = nn.Embed(
self.config.type_vocab_size,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(
stddev=self.config.initializer_range),
dtype=self.dtype,
)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps,
dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def __call__(self, graph, train):
dropout = nn.Dropout(rate=self.dropout_rate, deterministic=not train)
graph = graph._replace(
globals=jnp.zeros([graph.n_node.shape[0], self.num_outputs]))
embedder = jraph.GraphMapFeatures(
embed_node_fn=_make_embed(self.latent_dim),
embed_edge_fn=_make_embed(self.latent_dim))
graph = embedder(graph)
for _ in range(self.num_message_passing_steps):
net = jraph.GraphNetwork(update_edge_fn=_make_mlp(self.hidden_dims,
dropout=dropout),
update_node_fn=_make_mlp(self.hidden_dims,
dropout=dropout),
update_global_fn=_make_mlp(
self.hidden_dims, dropout=dropout))
graph = net(graph)
# Map globals to represent the final result
decoder = jraph.GraphMapFeatures(
embed_global_fn=nn.Dense(self.num_outputs))
graph = decoder(graph)
return graph.globals
def __call__(self, inputs_q, inputs_kv, is_training: bool):
assert inputs_q.ndim == inputs_kv.ndim == 3
in_ch = inputs_q.shape[-1]
assert in_ch % self.num_heads == 0
head_ch = self.head_ch or int(in_ch / self.num_heads)
out_ch = self.out_ch or in_ch
dense = partial(nn.DenseGeneral,
axis=-1,
features=(self.num_heads, head_ch),
use_bias=self.use_bias,
dtype=self.dtype)
query = dense(name='queries')(inputs_q)
key = dense(name='keys')(inputs_kv)
value = dense(name='values')(inputs_kv)
query = query / jnp.sqrt(head_ch)
attn_weights = jnp.einsum('... q h d, ... k h d -> ... h q k', query,
key)
if self.talking_heads:
attn_weights = TalkingHeadsBlock(
num_heads=self.num_heads)(attn_weights)
attn_weights = nn.softmax(attn_weights)
if self.talking_heads:
attn_weights = TalkingHeadsBlock(
num_heads=self.num_heads)(attn_weights)
attn_weights = nn.Dropout(rate=self.attn_dropout_rate)(
attn_weights, deterministic=not is_training)
attn_scores = jnp.einsum('... h q k, ... k h d -> ... q h d',
attn_weights, value)
output = nn.DenseGeneral(features=out_ch,
axis=(-2, -1),
use_bias=self.use_bias,
dtype=self.dtype)(attn_scores)
output = nn.Dropout(rate=self.out_dropout_rate)(
output, deterministic=not is_training)
return output
def __call__(self,
targets,
encoded,
decoder_mask=None,
encoder_decoder_mask=None):
"""Applies Transformer to decode the targets.
Args:
targets: target outputs.
encoded: encoded input data from encoder [batch, ..., length, mlp_dim].
decoder_mask: decoder self-attention mask
encoder_decoder_mask: encoder-decoder attention mask
Returns:
output of a transformer decoder.
"""
cfg = self.config
assert encoded.ndim == targets.ndim + 1
output_embed = nn.Embed(
num_embeddings=cfg.output_vocab_size,
features=cfg.emb_dim,
embedding_init=nn.initializers.normal(stddev=1.0),
name='embed_output')
heads = dict()
y = targets.astype('int32')
if cfg.shift:
y = shift_right(y, cfg.bos_token)
y = output_embed(y)
y = AddPositionEmbs(config=cfg,
cache=cfg.decode,
name='posembed_output')(y)
y = nn.Dropout(rate=cfg.dropout_rate)(y,
deterministic=cfg.deterministic)
y = y.astype(cfg.dtype)
# Target-Input Decoder
for lyr in range(cfg.num_layers):
y = EncoderDecoderBlock(config=cfg,
name=f'encoderdecoderblock_{lyr}')(
y, encoded, decoder_mask,
encoder_decoder_mask)
y = nn.LayerNorm(dtype=cfg.dtype, name='encoderdecoder_norm')(y)
heads['output_emb'] = y * (jnp.where(targets > 0, 1, 0).astype(
jnp.float32)[Ellipsis, None])
logits = nn.Dense(cfg.output_vocab_size,
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init,
name='logitdense')(y)
heads['logits'] = logits
if cfg.output_head:
return heads[cfg.output_head]
else:
return heads # Return both output embeddings and logits.
def __call__(self, inputs, train):
"""Applies Transformer MlpBlock module."""
actual_out_dim = inputs.shape[
-1] if self.out_dim is None else self.out_dim
x = nn.Dense(self.mlp_dim,
dtype=self.dtype,
kernel_init=self.kernel_init,
bias_init=self.bias_init)(inputs)
x = nn.relu(x)
x = nn.Dropout(rate=self.dropout_rate, deterministic=not train)(x)
output = nn.Dense(actual_out_dim,
dtype=self.dtype,
kernel_init=self.kernel_init,
bias_init=self.bias_init)(x)
output = nn.Dropout(rate=self.dropout_rate,
deterministic=not train)(output)
return output
def setup(self):
self.encoder = encoder_registry.get_registered_encoder(
self.encoder_name)(**self.encoder_config)
if self.apply_mlp:
self.mlp = nn.Dense(self.encoder_config.hidden_size, self.dtype)
self.dropout = nn.Dropout(self.encoder_config.dropout_rate)
self.linear_classifier = nn.Dense(self.vocab_size, dtype=self.dtype)
def setup(self):
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range, self.dtype),
dtype=self.dtype,
)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
def setup(self):
self.dropout_layer = nn.Dropout(rate=self.dropout_rate)
self.keys_only_mlp_attention = KeysOnlyMlpAttention(
hidden_size=self.hidden_size)
self.mlp = MLP(hidden_size=self.hidden_size,
output_size=self.output_size,
output_bias=False,
dropout_rate=self.dropout_rate)
def setup(self):
self.wav2vec2 = FlaxWav2Vec2Module(self.config, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.final_dropout)
self.lm_head = nn.Dense(
self.config.vocab_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range, self.dtype),
dtype=self.dtype,
)
def setup(self):
self.cls_token = self.param("cls_token", nn.initializers.zeros, (1, 1, self.config.hidden_size))
self.patch_embeddings = FlaxViTPatchEmbeddings(self.config, dtype=self.dtype)
num_patches = self.patch_embeddings.num_patches
self.position_embeddings = self.param(
"position_embeddings", nn.initializers.zeros, (1, num_patches + 1, self.config.hidden_size)
)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def __call__(self, inputs):
x = inputs
for size in self.feature_sizes:
x = nn.Dense(features=size)(x)
x = self.activation(x)
x = nn.Dropout(rate=self.dropout_rate,
deterministic=self.deterministic)(x)
return x
def __call__(self, inputs, deterministic=True):
"""Applies Transformer MlpBlock module."""
cfg = self.config
actual_out_dim = (inputs.shape[-1]
if self.out_dim is None else self.out_dim)
x = nn.Dense(cfg.mlp_dim,
dtype=cfg.dtype,
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init)(inputs)
x = nn.elu(x)
x = nn.Dropout(rate=cfg.dropout_rate)(x, deterministic=deterministic)
output = nn.Dense(actual_out_dim,
dtype=cfg.dtype,
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init)(x)
output = nn.Dropout(rate=cfg.dropout_rate)(output,
deterministic=deterministic)
return output
def setup(self):
self.roberta = FlaxRobertaModule(config=self.config,
dtype=self.dtype,
add_pooling_layer=False)
classifier_dropout = (self.config.classifier_dropout
if self.config.classifier_dropout is not None
else self.config.hidden_dropout_prob)
self.dropout = nn.Dropout(rate=classifier_dropout)
self.classifier = nn.Dense(self.config.num_labels, dtype=self.dtype)
def __call__(self, input_qkv):
cfg = self.config
cfg.max_len % cfg.max_seg_len == 0
bsize = input_qkv.shape[0]
features = self.out_features or input_qkv.shape[-1]
num_seg = cfg.max_len // cfg.max_seg_len
x_sqr = input_qkv.reshape([bsize, num_seg, cfg.max_seg_len, input_qkv.shape[-1]])
q_row_local, key_row_local, value_row_local, head_dim = get_qkv(cfg, x_sqr)
local_logits = jnp.einsum('...qhd,...khd->...qhk', q_row_local, key_row_local)
row_probs = jax.nn.softmax(local_logits)
if not cfg.deterministic and cfg.attention_dropout_rate > 0.:
dropout_rng = self.make_rng('dropout')
row_probs = dropatt(row_probs, dropout_rng, 1 - cfg.attention_dropout_rate)
row_attn_out = jnp.einsum('...qhk,...khd->...qhd', row_probs, value_row_local)
key_row = DenseGeneral(features=input_qkv.shape[-1],
axis=(-2, -1),
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init,
use_bias=False,
dtype=cfg.dtype)(row_attn_out)
key_row = nn.Dropout(rate=cfg.dropout_rate)(key_row, deterministic=cfg.deterministic)
key_row = key_row + x_sqr
key_row = nn.LayerNorm(dtype=cfg.dtype)(key_row)
key_row = DenseGeneral(axis=-1,
features=(cfg.num_heads, head_dim),
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init,
use_bias=False,
dtype=cfg.dtype)(key_row)
idx_cols = jnp.arange(cfg.max_seg_len)
local_mask = nn.make_attention_mask(idx_cols, idx_cols, jnp.less, extra_batch_dims=1)
local_mask = jnp.expand_dims(local_mask, axis=-2) * -1e10
local_logits = local_logits + local_mask
global_logits = jnp.einsum('bqlhd,bklhd->bqlhk', q_row_local, key_row)
idx_rows = jnp.arange(num_seg)
global_mask = nn.make_attention_mask(idx_rows, idx_rows, jnp.less_equal)
global_mask = global_mask[:, :, jnp.newaxis, jnp.newaxis, :] * -1e10
global_logits = global_logits + global_mask
joint_logits = jnp.concatenate((local_logits, global_logits), axis=-1)
attn_probs = jax.nn.softmax(joint_logits, axis=-1)
local_att, global_att = jnp.split(attn_probs, [cfg.max_seg_len], axis=-1)
if not cfg.deterministic and cfg.attention_dropout_rate > 0.:
dropout_rng = self.make_rng('dropout')
local_att = dropatt(local_att, dropout_rng, 1 - cfg.attention_dropout_rate)
local_merged = jnp.einsum('bsqhk,bskhd->bsqhd', local_att, value_row_local)
global_merged = jnp.einsum('bqlhv,bvlhd->bqlhd', global_att, row_attn_out)
joint_merged = jnp.reshape(local_merged + global_merged, [bsize, cfg.max_len, cfg.num_heads, head_dim])
x = DenseGeneral(features=features,
axis=(-2, -1),
kernel_init=cfg.kernel_init,
bias_init=cfg.bias_init,
use_bias=False,
dtype=cfg.dtype)(joint_merged)
return x
def setup(self):
self.mlp = nn.Dense(features=self.hidden_dim,
kernel_init=self.kernel_init,
bias_init=self.bias_init)
self.dense = nn.Dense(features=self.input_dim,
kernel_init=self.kernel_init,
bias_init=self.bias_init)
self.dropout = nn.Dropout(self.dropout_rate)
self.layer_norm = nn.LayerNorm(epsilon=self.layer_norm_epsilon)
def setup(self):
embed_dim = self.config.hidden_size
kernel_init = jax.nn.initializers.normal(self.config.initializer_range)
self.fc_in = nn.Dense(self.intermediate_size, dtype=self.dtype, kernel_init=kernel_init)
self.fc_out = nn.Dense(embed_dim, dtype=self.dtype, kernel_init=kernel_init)
self.act = ACT2FN[self.config.activation_function]
self.dropout = nn.Dropout(rate=self.config.resid_pdrop)
