def fit(params: optax.Params,
opt: optax.GradientTransformation) -> optax.Params:
state = TrainState.create(
apply_fn=net.apply,
params=params,
tx=opt,
# opt_state=opt.init(params)
)
@jax.jit
def step(state, batch, labels):
(loss_val,
accuracy), grads = jax.value_and_grad(loss,
has_aux=True)(state.params,
batch, labels)
state = state.apply_gradients(grads=grads)
return state, loss_val, accuracy
for i, (batch, labels) in enumerate(zip(train_data, train_labels)):
state, loss_val, accuracy = step(state, batch, labels)
if i % 100 == 0:
print(
f"step {i}/{nb_steps} | loss: {loss_val:.5f} | accuracy: {accuracy*100:.2f}%"
)
return params
def fit(params: optax.Params,
opt: optax.GradientTransformation) -> optax.Params:
# bundle together everything in the `TrainState class`
state = TrainState.create(
apply_fn=net.apply,
params=params,
tx=opt,
)
# jit compile the step function
@jax.jit
def train_step(state, batch, labels):
batch = jnp.transpose(batch, axes=(0, 2, 3, 1))
labels = jax.nn.one_hot(labels, nb_classes)
(loss_val, accuracy), grads = jax.value_and_grad(loss, has_aux=True)(
state.params, batch, labels) # return accuracy as aux
state = state.apply_gradients(
grads=grads
) # apply gradients to training state (calls other things internally)
return state, loss_val, accuracy
@jax.jit
def eval_step(params, batch, labels):
batch = jnp.transpose(batch, axes=(0, 2, 3, 1))
labels = jax.nn.one_hot(labels, nb_classes)
loss_val, accuracy = loss(params, batch, labels)
return loss_val, accuracy
for i in range(nb_epochs):
train_loss, train_accuracy = 0.0, 0.0
for batch, labels in train_loader:
batch, labels = jnp.array(batch), jnp.array(labels)
state, loss_val, accuracy = train_step(state, batch, labels)
train_loss += loss_val
train_accuracy += accuracy
test_loss, test_accuracy = 0.0, 0.0
for batch, labels in test_loader:
batch, labels = jnp.array(batch), jnp.array(labels)
loss_val, accuracy = eval_step(state.params, batch, labels)
test_loss += loss_val
test_accuracy += accuracy
train_loss /= len(train_loader)
train_accuracy /= len(train_loader)
test_loss /= len(test_loader)
test_accuracy /= len(test_loader)
print(
f"epoch {i+1}/{nb_epochs} | train: {train_loss:.5f} [{train_accuracy*100:.2f}%] | eval: {test_loss:.5f} [{test_accuracy*100:.2f}%]"
)
return params
def create_train_state(rng, model, img_size, lr_schedule_fn, weight_decay,
max_norm):
tx = optax.chain(optax.clip_by_global_norm(max_norm),
optax.scale_by_adam(),
optax.additive_weight_decay(weight_decay),
optax.scale_by_schedule(lr_schedule_fn))
params = model.init(rng,
jax.numpy.ones((1, img_size, img_size, 3)),
is_training=False)
train_state = TrainState.create(
apply_fn=model.apply,
params=params,
tx=tx,
)
return train_state
def collate_fn(batch):
inputs = np.stack([x[0] for x in batch], axis=0)
labels = np.array([x[1] for x in batch])
return {"inputs": inputs, "labels": labels}
if __name__ == "__main__":
num_epochs = 3
rng = random.PRNGKey(42)
model = Model()
dummy_inputs = np.ones((1, 28, 28, 1), np.float32)
params = model.init(rng, dummy_inputs)["params"]
tx = optax.adam(learning_rate=1e-3)
train_state = TrainState.create(apply_fn=model.apply, params=params, tx=tx)
train_loader = DataLoader(MNIST("data/mnist", download=True),
batch_size=64,
shuffle=True)
eval_loader = DataLoader(MNIST("data/mnist", train=False), batch_size=64)
p_train_state = replicate(train_state)
p_train_step = jax.pmap(train_step, "batch")
p_eval_step = jax.pmap(eval_step, "batch")
for epoch in range(num_epochs):
print(f"\nEpoch: {epoch}")
rng, input_rng = random.split(rng)
train_metrics = []
class Net(flax.linen.Module):
@flax.linen.compact
def __call__(self, x):
x = flax.linen.Dense(128)(x)
x = flax.linen.relu(x)
x = flax.linen.Dense(32)(x)
x = flax.linen.relu(x)
x = flax.linen.Dense(10)(x)
x = flax.linen.log_softmax(x)
return x
model = Net()
params = model.init(jax.random.PRNGKey(42), numpy.ones((1, 28 * 28)))["params"]
optimizer = optax.adam(0.001)
state = TrainState.create(apply_fn=model.apply, params=params, tx=optimizer)
@functools.partial(jax.jit, static_argnums=(3, ))
def step(x, y, state: TrainState, training: bool):
def loss_fn(params):
y_pred = model.apply({"params": params}, x)
y_one_hot = jax.nn.one_hot(y, 10)
loss = optax.softmax_cross_entropy(y_pred, y_one_hot).mean()
return loss, y_pred
x = x.reshape(-1, 28 * 28)
if training:
grad_fn = jax.value_and_grad(loss_fn, has_aux=True)
(loss, y_pred), grads = grad_fn(state.params)
state = state.apply_gradients(grads=grads)
def train(base_dir, config):
"""Train function."""
print(config)
chkpt_manager = checkpoint.Checkpoint(str(base_dir / 'train'))
writer = create_default_writer()
# Initialize dataset
key = jax.random.PRNGKey(config.seed)
key, subkey = jax.random.split(key)
ds = dataset.get_dataset(config, subkey, num_tasks=config.num_tasks)
ds_iter = iter(ds)
key, subkey = jax.random.split(key)
encoder = MLPEncoder(**config.encoder)
train_config = config.train.to_dict()
train_method = train_config.pop('method')
module_config = train_config.pop('module')
module_class = module_config.pop('name')
module = globals().get(module_class)(encoder, **module_config)
train_step = globals().get(f'train_step_{train_method}')
train_step = functools.partial(train_step, **train_config)
params = module.init(subkey, next(ds_iter)[0])
lr = optax.cosine_decay_schedule(config.learning_rate,
config.num_train_steps)
optim = optax.chain(optax.adam(lr),
# optax.adaptive_grad_clip(0.15)
)
state = TrainState.create(apply_fn=module.apply, params=params, tx=optim)
state = chkpt_manager.restore_or_initialize(state)
# Hooks
report_progress = periodic_actions.ReportProgress(
num_train_steps=config.num_train_steps, writer=writer)
hooks = [
report_progress,
periodic_actions.Profile(num_profile_steps=5, logdir=str(base_dir))
]
def handle_preemption(signal_number, _):
logging.info('Received signal %d, saving checkpoint.', signal_number)
with report_progress.timed('checkpointing'):
chkpt_manager.save(state)
logging.info('Finished saving checkpoint.')
signal.signal(signal.SIGTERM, handle_preemption)
metrics = TrainMetrics.empty()
with metric_writers.ensure_flushes(writer):
for step in tqdm.tqdm(range(state.step, config.num_train_steps)):
with jax.profiler.StepTraceAnnotation('train', step_num=step):
states, targets = next(ds_iter)
state, metrics = train_step(state, metrics, states, targets)
logging.log_first_n(logging.INFO, 'Finished training step %d', 5,
step)
if step % config.log_metrics_every == 0:
writer.write_scalars(step, metrics.compute())
metrics = TrainMetrics.empty()
# if step % config.log_eval_metrics_every == 0 and isinstance(
# ds, dataset.MDPDataset):
# eval_metrics = evaluate_mdp(state, ds.aux_task_matrix, config)
# writer.write_scalars(step, eval_metrics.compute())
for hook in hooks:
hook(step)
chkpt_manager.save(state)
return state
def evaluate(base_dir, config, *, train_state):
"""Eval function."""
chkpt_manager = checkpoint.Checkpoint(str(base_dir / 'eval'))
writer = create_default_writer()
key = jax.random.PRNGKey(config.eval.seed)
model_init_key, ds_key = jax.random.split(key)
linear_module = LinearModule(config.eval.num_tasks)
params = linear_module.init(model_init_key,
jnp.zeros((config.encoder.embedding_dim, )))
lr = optax.cosine_decay_schedule(config.eval.learning_rate,
config.num_eval_steps)
optim = optax.adam(lr)
ds = dataset.get_dataset(config, ds_key, num_tasks=config.eval.num_tasks)
ds_iter = iter(ds)
state = TrainState.create(apply_fn=linear_module.apply,
params=params,
tx=optim)
state = chkpt_manager.restore_or_initialize(state)
report_progress = periodic_actions.ReportProgress(
num_train_steps=config.num_eval_steps, writer=writer)
hooks = [
report_progress,
periodic_actions.Profile(num_profile_steps=5, logdir=str(base_dir))
]
def handle_preemption(signal_number, _):
logging.info('Received signal %d, saving checkpoint.', signal_number)
with report_progress.timed('checkpointing'):
chkpt_manager.save(state)
logging.info('Finished saving checkpoint.')
signal.signal(signal.SIGTERM, handle_preemption)
metrics = EvalMetrics.empty()
with metric_writers.ensure_flushes(writer):
for step in tqdm.tqdm(range(state.step, config.num_eval_steps)):
with jax.profiler.StepTraceAnnotation('eval', step_num=step):
states, targets = next(ds_iter)
state, metrics = evaluate_step(train_state, state, metrics,
states, targets)
if step % config.log_metrics_every == 0:
writer.write_scalars(step, metrics.compute())
metrics = EvalMetrics.empty()
for hook in hooks:
hook(step)
# Finally, evaluate on the true(ish) test aux task matrix.
states, targets = dataset.EvalDataset(config, ds_key).get_batch()
@jax.jit
def loss_fn():
outputs = train_state.apply_fn(train_state.params, states)
phis = outputs.phi
predictions = jax.vmap(state.apply_fn,
in_axes=(None, 0))(state.params, phis)
return jnp.mean(optax.l2_loss(predictions, targets))
test_loss = loss_fn()
writer.write_scalars(config.num_eval_steps + 1,
{'test_loss': test_loss})
