def load_data(sample: fk.Sample):
channels = range(SKIP, len(sample.channels))
channel_data = []
for channel in channels:
channel_data.append(
np.array(sample.get_channel_data(channel, source="raw")))
return np.array(channel_data).T
def test_get_channel_data_comp():
fcs_file_path = "examples/test_comp_example.fcs"
comp_file_path = Path("examples/comp_complete_example.csv")
sample = Sample(fcs_path_or_data=fcs_file_path,
compensation=comp_file_path)
data_idx_6 = sample.get_channel_data(6, source='comp')
np.testing.assert_equal(sample._comp_events[:, 6], data_idx_6)
def test_get_channel_data_xform():
fcs_file_path = "examples/test_comp_example.fcs"
comp_file_path = Path("examples/comp_complete_example.csv")
sample = Sample(fcs_path_or_data=fcs_file_path,
compensation=comp_file_path)
sample.apply_transform(xform_logicle)
data_idx_6 = sample.get_channel_data(6, source='xform')
np.testing.assert_equal(sample._transformed_events[:, 6], data_idx_6)
def load_time(sample: fk.Sample):
""" Assuming the time is channel 0 """
return np.array(sample.get_channel_data(0, source="raw"))