Exemple #1
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def load_data(sample: fk.Sample):
    channels = range(SKIP, len(sample.channels))
    channel_data = []

    for channel in channels:
        channel_data.append(
            np.array(sample.get_channel_data(channel, source="raw")))

    return np.array(channel_data).T
Exemple #2
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    def test_get_channel_data_comp():
        fcs_file_path = "examples/test_comp_example.fcs"
        comp_file_path = Path("examples/comp_complete_example.csv")

        sample = Sample(fcs_path_or_data=fcs_file_path,
                        compensation=comp_file_path)

        data_idx_6 = sample.get_channel_data(6, source='comp')

        np.testing.assert_equal(sample._comp_events[:, 6], data_idx_6)
Exemple #3
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    def test_get_channel_data_xform():
        fcs_file_path = "examples/test_comp_example.fcs"
        comp_file_path = Path("examples/comp_complete_example.csv")

        sample = Sample(fcs_path_or_data=fcs_file_path,
                        compensation=comp_file_path)
        sample.apply_transform(xform_logicle)

        data_idx_6 = sample.get_channel_data(6, source='xform')

        np.testing.assert_equal(sample._transformed_events[:, 6], data_idx_6)
Exemple #4
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def load_time(sample: fk.Sample):
    """ Assuming the time is channel 0 """
    return np.array(sample.get_channel_data(0, source="raw"))