def scimeta_add(self, pid, file_name=None, format_id=None, **kwargs):
""" Add a scimeta object.
"""
if not pid:
raise Exception("Missing the pid")
# if (self.scimeta and not
# cli_util.confirm('Do you wish to delete the existing science metadata object?')):
# return
else:
self.scimeta = None
if not file_name:
new_meta = utils.get_sysmeta_by_pid(pid, True)
if not new_meta:
raise Exception("Couldn't find scimeta in DataONE, and there was no file specified.")
if not self._is_metadata_format(new_meta.formatId):
raise Exception('"%s" is not an allowable science metadata type.' % new_meta.formatId)
new_pid = new_meta.identifier.value()
if new_pid != pid:
pid = new_pid
self.scimeta = self._get_by_pid(pid, new_meta)
authMN = new_meta.authoritativeMemberNode
if authMN:
baseURL = utils.get_baseUrl(authMN.value())
if baseURL:
self.scimeta.url = utils.create_get_url_for_pid(baseURL, pid)
else:
complex_path = utils.create_complex_path(file_name)
if not os.path.exists(complex_path.path):
raise Exception("%s: file not found" % complex_path.path)
if not format_id:
format_id = complex_path.formatId
if not format_id and configuration.check("format"):
format_id = configuration.format
if not format_id:
raise Exception("The object format could not be determined and was not defined.")
if not self._is_metadata_format(format_id):
raise Exception('"%s" is not an allowable science metadata type.' % new_meta.formatId)
return
#
sysmeta = utils.create_sysmeta_from_path(pid, complex_path.path, format_id=format_id, **kwargs)
self.scimeta = DataObject(pid, True, complex_path.path, None, sysmeta, format_id)
scidata_list = self._find_scidata(self.scimeta)
if scidata_list:
for scidata in scidata_list:
self.scidata_add(scidata.pid, scidata.fname)
def _create_object(self, item, mn_client=None, **kwargs):
""" Create an object in DataONE. """
path = utils.expand_path(item.fname)
# cli_util.assert_file_exists(path)
assert os.path.exists(path)
if "format_id" in kwargs:
del kwargs["format_id"]
sysmeta = utils.create_sysmeta_from_path(item.pid, path, format_id=item.format_id, **kwargs)
if mn_client is None:
mn_client = utils.get_d1_mn_client()
with open(path, "r") as f:
try:
result = mn_client.create(item.pid, f, sysmeta)
print 'Created object "%s"' % item.pid
return result
except DataONEException as e:
raise Exception("Unable to create Science Object on Member Node\n{0}".format(e.friendly_format()))
def scidata_add(self, pid, file_name=None, format_id=None, **kwargs):
""" Add a science data object to the list.
"""
if not pid:
raise Exception("Missing the pid")
if file_name:
# if utils.get_sysmeta_by_pid(pid):
# if not cli_util.confirm('That pid (%s) already exists in DataONE. Continue?' % pid):
# return
# raise Exception("The identifer (%s) already exists in DataONE." % pid)
complex_path = utils.create_complex_path(file_name)
if not format_id:
format_id = complex_path.formatId
if not format_id and configuration.check("format"):
format_id = configuration.format
if not format_id:
raise Exception("The object format could not be determined and was not defined.")
meta = utils.create_sysmeta_from_path(pid, complex_path.path, format_id=format_id, **kwargs)
self.scidata_dict[pid] = DataObject(pid, True, complex_path.path, None, meta, format_id)
else:
sysmeta = utils.get_sysmeta_by_pid(pid, True)
if not sysmeta:
raise Exception("The identifier (%s) was not found in DataONE." % pid)
else:
pid = sysmeta.identifier.value()
# if pid in self.scidata_dict:
# if not cli_util.confirm('That science data object (%s) is already in the package. Replace?' % pid):
# return
# Get the scidata object.
scidata = self._get_by_pid(pid, sysmeta)
authMN = sysmeta.authoritativeMemberNode
if authMN:
baseURL = utils.get_baseUrl(authMN.value())
if baseURL:
scidata.url = utils.create_get_url_for_pid(baseURL, pid)
self.scidata_dict[pid] = scidata