def sample_dendrograms(p):
samples_dict = DeserializeFromFile(p.files.sample_map_filtered_samples_dict_file_path)
debug("Generating dendrograms for sample map...", p.files.log_file)
ranks = GetCopy(c.ranks[p.type])
if p.type == "rdp":
ranks.remove("domain")
framework.tools.hcluster.generate(
samples_dict,
DeserializeFromFile(p.files.otu_library_file_path),
pie_charts_dir=p.dirs.pie_charts_dir,
dendrogram_prefix=c.pie_chart_dendrogram_file_prefix,
save_dir=p.dirs.sample_map_dendrograms_dir,
map=helper_functions.get_sample_map_dict(p),
ranks=ranks,
)
def get_sample_maps(self):
analysis_id = self.request_dict['analysis_id']
p = Meta(analysis_id)
maps = []
# if instance specified, return only that, otherwise return all sample maps.
sample_map_instances = []
if self.request_dict.has_key('instance'):
sample_map_instances.append(self.request_dict['instance'])
else:
sample_map_instances = p.dirs.get_sample_map_instances()
for instance in sample_map_instances:
p.dirs.change_current_sample_map_instance(p.files, instance)
maps.append(helper_functions.get_sample_map_dict(p))
self.write_socket({'response': 'OK', 'sample_maps': maps})
