def setUp(self):
self.f = h5py.File(self.filename, driver='core',
backing_store=False)
self.x = np.array([0, 1, 2])
self.y = np.array([0, 2, 4])
self.x_attrs = {'name': 't',
'unit': 's',
'label': 't [s]',
'label_latex': '$t \\: [\\mathrm{s}]$',
'help': 'time axis',
'initial': 0,
'step': 1}
self.y_attrs = {'name': 'x',
'unit': 'nm',
'label': 'x [nm]',
'label_latex': '$x \: [\mathrm{nm}]$',
'help': 'cantilever amplitude',
'abscissa': 'x',
'n_avg': 1}
self.f['x'] = self.x
self.f['y'] = self.y
update_attrs(self.f['x'].attrs, self.x_attrs)
update_attrs(self.f['y'].attrs, self.y_attrs)
self.s = Signal()
def setUp(self):
self.f = h5py.File(self.filename, driver='core', backing_store=False)
self.x = np.array([0, 1, 2])
self.y = np.array([0, 2, 4])
self.x_attrs = {
'name': 't',
'unit': 's',
'label': 't [s]',
'label_latex': '$t \\: [\\mathrm{s}]$',
'help': 'time axis',
'initial': 0,
'step': 1
}
self.y_attrs = {
'name': 'x',
'unit': 'nm',
'label': 'x [nm]',
'label_latex': '$x \: [\mathrm{nm}]$',
'help': 'cantilever amplitude',
'abscissa': 'x',
'n_avg': 1
}
self.f['x'] = self.x
self.f['y'] = self.y
update_attrs(self.f['x'].attrs, self.x_attrs)
update_attrs(self.f['y'].attrs, self.y_attrs)
self.s = Signal()
def write_h5file(self):
"""Write the representative dataset to a file."""
f = h5py.File(self.filename, 'w')
update_attrs(f.attrs, self.f_attrs)
f['x'] = self.t
update_attrs(f['x'].attrs, self.x_attrs)
f0 = 0.013/(2*self.dt)
self.y = np.sin(2*np.pi*f0*self.t)
f['y'] = self.y
update_attrs(f['y'].attrs, self.y_attrs)
f.close()
def write_h5file(self):
"""Write the representative dataset to a file."""
f = h5py.File(self.filename, 'w')
update_attrs(f.attrs, self.f_attrs)
f['x'] = self.t
update_attrs(f['x'].attrs, self.x_attrs)
f0 = 0.013 / (2 * self.dt)
self.y = np.sin(2 * np.pi * f0 * self.t)
f['y'] = self.y
update_attrs(f['y'].attrs, self.y_attrs)
f.close()
def test_empty_write(self):
"""Writing an empty dictionary should do nothing."""
empty_attrs = {}
update_attrs(self.f.attrs, empty_attrs)
assert self.f.attrs['to-be-overwritten'] == 'initial'
def test_normal_write(self):
"""Writing a non-empty dictionary should do something"""
attrs = {'one': 1}
update_attrs(self.f.attrs, attrs)
assert self.f.attrs['one'] == 1
def test_overwrite(self):
"""The function *should* overwrite existing attributes"""
attrs = {'to-be-overwritten': 0}
update_attrs(self.f.attrs, attrs)
assert self.f.attrs['to-be-overwritten'] == 0
def test_empty_write(self):
"""Writing an empty dictionary should do nothing."""
empty_attrs = {}
update_attrs(self.f.attrs, empty_attrs)
assert self.f.attrs['to-be-overwritten'] == 'initial'
def test_normal_write(self):
"""Writing a non-empty dictionary should do something"""
attrs = {'one': 1}
update_attrs(self.f.attrs, attrs)
assert self.f.attrs['one'] == 1
def test_overwrite(self):
"""The function *should* overwrite existing attributes"""
attrs = {'to-be-overwritten': 0}
update_attrs(self.f.attrs, attrs)
assert self.f.attrs['to-be-overwritten'] == 0