def testSearchPhenotypeAssociationSets(self):
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = self.datasetId
request.page_size = self.pageSize
self.httpClient.search_phenotype_association_sets(
dataset_id=self.datasetId)
self.httpClient._run_search_request.assert_called_once_with(
request, "phenotypeassociationsets",
protocol.SearchPhenotypeAssociationSetsResponse)
def search_phenotype_association_sets(self, dataset_id):
"""
Returns an iterator over the PhenotypeAssociationSets on the server.
"""
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = dataset_id
request.page_size = pb.int(self._page_size)
return self._run_search_request(
request, "phenotypeassociationsets",
protocol.SearchPhenotypeAssociationSetsResponse)
def testPhenotypeAssociationSetSearch(self):
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest("datasets/search", request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendSearchRequest(
"phenotypeassociationsets/search", request,
protocol.SearchPhenotypeAssociationSetsResponse)
# there should be an array
self.assertIsNotNone(response.phenotype_association_sets)
# there should be at least one entry
self.assertGreater(len(response.phenotype_association_sets), 0)
def getPhenotypeAssociationSetId(self):
"""
Gets the dataset phenotype association set ID
"""
request = protocol.SearchDatasetsRequest()
response = self.sendSearchRequest("datasets/search", request,
protocol.SearchDatasetsResponse)
datasetId = response.datasets[0].id
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = datasetId
response = self.sendPostRequest("phenotypeassociationsets/search",
request)
response = protocol.fromJson(
response.data, protocol.SearchPhenotypeAssociationSetsResponse)
return response.phenotype_association_sets[0].id
def sendPhenotypeAssociationSetsSearch(self):
request = protocol.SearchPhenotypeAssociationSetsRequest()
request.dataset_id = self.datasetId
return self.sendPostRequest('/phenotypeassociationsets/search',
request)