def testGoodMappings(self):
ontology = self._gaObject
for term in self._oboReader:
self.assertIn(term.id, ontology.getTermIds(term.name))
gaTerm = ontology.getGaTermByName(term.name)
self.assertTrue(protocol.validate(protocol.toJson(gaTerm),
OntologyTerm))
self.assertEqual(gaTerm.term, term.name)
self.assertIn(gaTerm.term_id, ontology.getTermIds(term.name))
def validateRequest(self, jsonDict, requestClass):
"""
Ensures the jsonDict corresponds to a valid instance of requestClass
Throws an error if the data is invalid
"""
if self._requestValidation:
if not protocol.validate(jsonDict, requestClass):
raise exceptions.RequestValidationFailureException(
jsonDict, requestClass)
def validateRequest(self, jsonDict, requestClass):
"""
Ensures the jsonDict corresponds to a valid instance of requestClass
Throws an error if the data is invalid
"""
if self._requestValidation:
if not protocol.validate(jsonDict, requestClass):
raise exceptions.RequestValidationFailureException(
jsonDict, requestClass)
def sendSearchRequest(self, path, request, responseClass):
"""
Sends the specified protocol request instance as JSON, and
parses the result into an instance of the specified response.
"""
response = self.sendJsonPostRequest(path, protocol.toJson(request))
self.assertEqual(200, response.status_code)
responseData = protocol.fromJson(response.data, responseClass)
self.assertTrue(
protocol.validate(protocol.toJson(responseData), responseClass))
return responseData
def sendSearchRequest(self, path, request, responseClass):
"""
Sends the specified protocol request instance as JSON, and
parses the result into an instance of the specified response.
"""
response = self.sendJsonPostRequest(path, protocol.toJson(request))
self.assertEqual(200, response.status_code)
responseData = protocol.fromJson(response.data, responseClass)
self.assertTrue(
protocol.validate(protocol.toJson(responseData), responseClass))
return responseData
def sendSearchRequest(self, path, request, responseClass):
"""
Sends the specified protocol request instance as JSON, and
parses the result into an instance of the specified response.
"""
response = self.sendJsonPostRequest(path, protocol.toJson(request))
# self.assertEqual(200, response.status_code) federated search can return 404
responseData = self.deserialize(response.data, responseClass)
# responseData = protocol.fromProtobufString(response.data,
# responseClass)
self.assertTrue(
protocol.validate(protocol.toJson(responseData), responseClass))
return responseData
def sendSearchRequest(self, path, request, responseClass):
"""
Sends the specified protocol request instance as JSON, and
parses the result into an instance of the specified response.
"""
response = self.sendJsonPostRequest(path, protocol.toJson(request))
# self.assertEqual(200, response.status_code) federated search can return 404
response_json = json.loads(response.data)
response = json.dumps(response_json.get('results', {}))
responseData = protocol.deserialize(response, self.serialization,
responseClass)
self.assertTrue(
protocol.validate(protocol.toJson(responseData), responseClass))
return responseData
def testValidate(self):
classes = protocol.getProtocolClasses()
for clazz in classes:
obj = clazz()
jsonStr = protocol.toJson(obj)
protocol.validate(jsonStr, clazz)
def testValidate(self):
classes = protocol.getProtocolClasses()
for clazz in classes:
obj = clazz()
jsonStr = protocol.toJson(obj)
protocol.validate(jsonStr, clazz)