def test_id_1():
# object_store_store_by not set
# file_path set by admin to `not_objects` (no need for the dir to exist)
appconfig = config.GalaxyAppConfiguration(file_path='not_objects',
override_tempdir=False)
assert appconfig.object_store_store_by == 'id'
def test_base_config_if_running_from_source(monkeypatch, mock_config_file):
# Simulated condition: running from source, config_file is None.
monkeypatch.setattr(config, 'running_from_source', True)
appconfig = config.GalaxyAppConfiguration()
assert not appconfig.config_file
assert appconfig.config_dir == os.path.join(appconfig.root, 'config')
assert appconfig.data_dir == os.path.join(appconfig.root, 'database')
assert appconfig.managed_config_dir == appconfig.config_dir
def test_uuid_2(mock_config_file, monkeypatch):
# object_store_store_by not set
# file_path not set, `files` dir doesn't exist
monkeypatch.setattr(BaseAppConfiguration, '_path_exists',
lambda self, path: False)
appconfig = config.GalaxyAppConfiguration()
assert appconfig.object_store_store_by == 'uuid'
def test_id_2(mock_config_file, monkeypatch):
# object_store_store_by not set
# file_path not set, `files` dir exists
monkeypatch.setattr(
BaseAppConfiguration, '_path_exists', lambda self, path: True
if os.path.basename(path) == 'files' else False)
appconfig = config.GalaxyAppConfiguration()
assert appconfig.object_store_store_by == 'id'
def test_base_config_if_running_not_from_source(monkeypatch, mock_config_file):
# Simulated condition: running not from source, config_file is None.
monkeypatch.setattr(config, 'running_from_source', False)
appconfig = config.GalaxyAppConfiguration(override_tempdir=False)
assert not appconfig.config_file
assert appconfig.config_dir == os.getcwd()
assert appconfig.data_dir == os.path.join(appconfig.config_dir, 'data')
assert appconfig.managed_config_dir == os.path.join(
appconfig.data_dir, 'config')
def get_config_data():
configuration = config.GalaxyAppConfiguration(override_tempdir=False)
ev = ExpectedValues(configuration)
items = ((k, v) for k, v in configuration.schema.app_schema.items())
for key, data in items:
expected = ev.get_value(key, data)
loaded = getattr(configuration, key)
test_data = TestData(key=key, expected=expected, loaded=loaded)
yield pytest.param(test_data)
def appconfig():
return config.GalaxyAppConfiguration()
def test_id_1(mock_config_file, monkeypatch):
# object_store_store_by not set
# file_path set by admin to `not_objects` (no need for the dir to exist)
appconfig = config.GalaxyAppConfiguration(file_path='not_objects')
assert appconfig.object_store_store_by == 'id'
def test_object_store_store_by_set(mock_config_file, monkeypatch):
# object_store_store_by set by admin
appconfig = config.GalaxyAppConfiguration(object_store_store_by='id')
assert appconfig.object_store_store_by == 'id'
def test_object_store_store_by_set():
# object_store_store_by set by admin
appconfig = config.GalaxyAppConfiguration(object_store_store_by='id',
override_tempdir=False)
assert appconfig.object_store_store_by == 'id'
def appconfig(monkeypatch):
monkeypatch.setattr(config.GalaxyAppConfiguration, '_override_tempdir', lambda a, b: None)
return config.GalaxyAppConfiguration()
def appconfig():
return config.GalaxyAppConfiguration(override_tempdir=False)
