def check_conda(tool_name, ctx, **kwds):
"""
Get the most up-to-date conda version for a tool requirement
"""
conda_context = planemo.conda.build_conda_context(ctx, **kwds)
if not conda_context.is_conda_installed():
error("Conda is not installed! Try running planemo conda_init.")
target = planemo.conda.conda_util.CondaTarget(tool_name)
search_results = conda_util.best_search_result(target,
conda_context=conda_context)
return search_results[0]['version']
def best_practice_search(conda_target, conda_context=None, platform=None):
# Call it in offline mode after the first time.
try:
best_practice_search_first.previously_called
# TODO: Undo this...
offline = False
except AttributeError:
best_practice_search_first.previously_called = True
offline = False
if not conda_context:
conda_context = conda_util.CondaContext()
return conda_util.best_search_result(
conda_target,
conda_context=conda_context,
channels_override=BEST_PRACTICE_CHANNELS,
offline=offline,
platform=platform,
)
def check_conda(tool_name, ctx, **kwds):
"""
Get the most up-to-date conda version for a tool requirement
"""
conda_context = planemo.conda.build_conda_context(ctx, **kwds)
if not conda_context.is_conda_installed():
# check directly via Anaconda API
r = requests.get('https://api.anaconda.org/search',
params={'name': tool_name})
search_results = sum([
n['versions'] for n in r.json() if n['name'] == tool_name
and n['owner'] in kwds['conda_ensure_channels']
], [])
return sorted(search_results,
key=lambda n: packaging.version.parse(n))[-1]
target = planemo.conda.conda_util.CondaTarget(tool_name)
search_results = conda_util.best_search_result(target,
conda_context=conda_context)
return search_results[0]['version']
def get_conda_hits_for_targets(targets, conda_context):
search_results = (best_search_result(t, conda_context, platform='linux-64')[0] for t in targets)
return [r for r in search_results if r]