def parse_tags(self, tag_str):
"""
Return a list of tag tuples (name, value) pairs derived from a string.
>>> th = TagHandler("bridge_of_death")
>>> assert th.parse_tags("#ARTHUR") == [('name', 'ARTHUR')]
>>> tags = th.parse_tags("name:Lancelot of Camelot;#Holy Grail;blue")
>>> assert tags == [('name', 'LancelotofCamelot'), ('name', 'HolyGrail'), ('blue', None)]
"""
# Gracefully handle None.
if not tag_str:
return dict()
# Strip unicode control characters
tag_str = strip_control_characters(tag_str)
# Split tags based on separators.
reg_exp = re.compile('[' + self.tag_separators + ']')
raw_tags = reg_exp.split(tag_str)
return self.parse_tags_list(raw_tags)
def parse_tags(self, tag_str):
"""
Returns a list of raw (tag-name, value) pairs derived from a string; method scrubs tag names and values as well.
Return value is a list of (tag_name, tag_value) tuples.
"""
# Gracefully handle None.
if not tag_str:
return dict()
# Strip unicode control characters
tag_str = strip_control_characters(tag_str)
# Split tags based on separators.
reg_exp = re.compile('[' + self.tag_separators + ']')
raw_tags = reg_exp.split(tag_str)
# Extract name-value pairs.
name_value_pairs = []
for raw_tag in raw_tags:
nv_pair = self._get_name_value_pair(raw_tag)
scrubbed_name = self._scrub_tag_name(nv_pair[0])
scrubbed_value = self._scrub_tag_value(nv_pair[1])
# Append tag_name, tag_value tuple -- TODO use NamedTuple
name_value_pairs.append((scrubbed_name, scrubbed_value))
return name_value_pairs
def parse_tags(self, tag_str):
"""
Returns a list of raw (tag-name, value) pairs derived from a string; method scrubs tag names and values as well.
Return value is a list of (tag_name, tag_value) tuples.
"""
# Gracefully handle None.
if not tag_str:
return dict()
# Strip unicode control characters
tag_str = strip_control_characters(tag_str)
# Split tags based on separators.
reg_exp = re.compile('[' + self.tag_separators + ']')
raw_tags = reg_exp.split(tag_str)
# Extract name-value pairs.
name_value_pairs = []
for raw_tag in raw_tags:
nv_pair = self._get_name_value_pair(raw_tag)
scrubbed_name = self._scrub_tag_name(nv_pair[0])
scrubbed_value = self._scrub_tag_value(nv_pair[1])
# Append tag_name, tag_value tuple -- TODO use NamedTuple
name_value_pairs.append((scrubbed_name, scrubbed_value))
return name_value_pairs
def test_strip_control_characters():
s = '\x00bla'
assert util.strip_control_characters(s) == 'bla'
def test_strip_control_characters():
s = '\x00bla'
assert util.strip_control_characters(s) == 'bla'
import json
from galaxy.util import strip_control_characters
from jinja2 import Environment, PackageLoader
from pkg_resources import resource_string
TITLE = "Tool Test Results (powered by Planemo)"
env = Environment(loader=PackageLoader('planemo', 'reports'))
env.filters['strip_control_characters'] = lambda x: strip_control_characters(x) if x else x
def build_report(structured_data, report_type="html", **kwds):
""" Use report_{report_type}.tpl to build page for report.
"""
environment = dict(
title=TITLE,
raw_data=structured_data,
)
if report_type == 'html':
# The HTML report format needs a lot of extra, custom data.
# IMO, this seems to suggest it should be embedded.
environment.update({
'custom_style': __style("custom.css"),
'custom_script': __script("custom"),
'bootstrap_style': __style("bootstrap.min.css"),
'jquery_script': __script("jquery.min"),
'bootstrap_script': __script("bootstrap.min"),
'json': json,
})
import json
from galaxy.util import strip_control_characters
from jinja2 import Environment, PackageLoader
from pkg_resources import resource_string
TITLE = "Tool Test Results (powered by Planemo)"
env = Environment(loader=PackageLoader('planemo', 'reports'))
env.filters['strip_control_characters'] = lambda x: strip_control_characters(
x) if x else x
def build_report(structured_data, report_type="html", **kwds):
""" Use report_{report_type}.tpl to build page for report.
"""
environment = dict(
title=TITLE,
raw_data=structured_data,
)
if report_type == 'html':
# The HTML report format needs a lot of extra, custom data.
# IMO, this seems to suggest it should be embedded.
environment.update({
'custom_style': __style("custom.css"),
'custom_script': __script("custom"),
'bootstrap_style': __style("bootstrap.min.css"),
'jquery_script': __script("jquery.min"),
'bootstrap_script': __script("bootstrap.min"),
'json': json,
})