def __init__(self, config=None, **kwargs):
self.config = config or MockAppConfig(**kwargs)
self.security = self.config.security
self.name = kwargs.get('name', 'galaxy')
self.object_store = objectstore.build_object_store_from_config(
self.config)
self.model = mapping.init("/tmp",
self.config.database_connection,
create_tables=True,
object_store=self.object_store)
self.security_agent = self.model.security_agent
self.visualizations_registry = MockVisualizationsRegistry()
self.tag_handler = tags.GalaxyTagHandler(self.model.context)
self.quota_agent = quota.DatabaseQuotaAgent(self.model)
self.init_datatypes()
self.job_config = Bunch(dynamic_params=None, destinations={})
self.tool_data_tables = {}
self.dataset_collections_service = None
self.container_finder = NullContainerFinder()
self._toolbox_lock = MockLock()
self.tool_shed_registry = Bunch(tool_sheds={})
self.genome_builds = GenomeBuilds(self)
self.job_manager = NoopManager()
self.application_stack = ApplicationStack()
self.auth_manager = AuthManager(self)
self.user_manager = UserManager(self)
self.execution_timer_factory = Bunch(
get_timer=StructuredExecutionTimer)
def url_for(*args, **kwds):
return "/mock/url"
self.url_for = url_for
def __init__(self, config=None, **kwargs):
super().__init__()
self[BasicApp] = self
self[MinimalManagerApp] = self
self[StructuredApp] = self
self.config = config or MockAppConfig(**kwargs)
self.security = self.config.security
self[idencoding.IdEncodingHelper] = self.security
self.name = kwargs.get('name', 'galaxy')
self.object_store = objectstore.build_object_store_from_config(
self.config)
self.model = mapping.init("/tmp",
self.config.database_connection,
create_tables=True,
object_store=self.object_store)
self[SharedModelMapping] = self.model
self[GalaxyModelMapping] = self.model
self[scoped_session] = self.model.context
self.security_agent = self.model.security_agent
self.visualizations_registry = MockVisualizationsRegistry()
self.tag_handler = tags.GalaxyTagHandler(self.model.context)
self[tags.GalaxyTagHandler] = self.tag_handler
self.quota_agent = quota.DatabaseQuotaAgent(self.model)
self.init_datatypes()
self.job_config = Bunch(dynamic_params=None,
destinations={},
use_messaging=False,
assign_handler=lambda *args, **kwargs: None)
self.tool_data_tables = {}
self.dataset_collections_service = None
self.container_finder = NullContainerFinder()
self._toolbox_lock = MockLock()
self.tool_shed_registry = Bunch(tool_sheds={})
self.genome_builds = GenomeBuilds(self)
self.job_manager = NoopManager()
self.application_stack = ApplicationStack()
self.auth_manager = AuthManager(self.config)
self.user_manager = UserManager(self)
self.execution_timer_factory = Bunch(
get_timer=StructuredExecutionTimer)
self.is_job_handler = False
rebind_container_to_task(self)
def url_for(*args, **kwds):
return "/mock/url"
self.url_for = url_for
def __init__(self, config=None, **kwargs):
super().__init__()
config = config or MockAppConfig(**kwargs)
GalaxyDataTestApp.__init__(self, config=config, **kwargs)
self[BasicSharedApp] = self
self[MinimalManagerApp] = self
self[StructuredApp] = self
self[idencoding.IdEncodingHelper] = self.security
self.name = kwargs.get('name', 'galaxy')
self[SharedModelMapping] = self.model
self[GalaxyModelMapping] = self.model
self[galaxy_scoped_session] = self.model.context
self.visualizations_registry = MockVisualizationsRegistry()
self.tag_handler = tags.GalaxyTagHandler(self.model.context)
self[tags.GalaxyTagHandler] = self.tag_handler
self.quota_agent = quota.DatabaseQuotaAgent(self.model)
self.job_config = Bunch(
dynamic_params=None,
destinations={},
use_messaging=False,
assign_handler=lambda *args, **kwargs: None
)
self.tool_data_tables = ToolDataTableManager(tool_data_path=self.config.tool_data_path)
self.dataset_collections_service = None
self.container_finder = NullContainerFinder()
self._toolbox_lock = MockLock()
self.tool_shed_registry = Bunch(tool_sheds={})
self.genome_builds = GenomeBuilds(self)
self.job_manager = NoopManager()
self.application_stack = ApplicationStack()
self.auth_manager = AuthManager(self.config)
self.user_manager = UserManager(self)
self.execution_timer_factory = Bunch(get_timer=StructuredExecutionTimer)
self.file_sources = Bunch(to_dict=lambda *args, **kwargs: {})
self.interactivetool_manager = Bunch(create_interactivetool=lambda *args, **kwargs: None)
self.is_job_handler = False
self.biotools_metadata_source = None
rebind_container_to_task(self)
def url_for(*args, **kwds):
return "/mock/url"
self.url_for = url_for
def application_stack(self):
if not self._application_stack:
self._application_stack = ApplicationStack()
return self._application_stack
def application_stack(self):
if not self._application_stack:
ApplicationStack.get_preferred_handler_assignment_method = lambda x: HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED
self._application_stack = ApplicationStack()
return self._application_stack