def call_importer(args, cfg): # pragma: no cover
"""Returns result of galaxy_importer import process.
:param file: Artifact file to import.
Method excluded from pytest unit test coverage, tests exist in tests/integration
"""
if not args.file:
return collection.import_collection(
git_clone_path=os.path.abspath(args.git_clone_path),
output_path=os.path.abspath(args.output_path),
logger=logger,
cfg=cfg,
)
match = FILENAME_REGEXP.match(os.path.basename(args.file))
namespace, name, version = match.groups()
filename = collection.CollectionFilename(namespace, name, version)
with open(args.file, "rb") as fh:
try:
data = collection.import_collection(fh, filename, logger=logger, cfg=cfg)
except ImporterError as e:
logger.error(f"The import failed for the following reason: {str(e)}")
return None
except Exception as e:
logger.exception(f"Unexpected error occurred: {str(e)}")
return None
logger.info("Importer processing completed successfully")
return data
def call_importer(filepath, cfg):
"""Returns result of galaxy_importer import process.
:param file: Artifact file to import.
"""
match = FILENAME_REGEXP.match(os.path.basename(filepath))
namespace, name, version = match.groups()
filename = collection.CollectionFilename(namespace, name, version)
with open(filepath, 'rb') as f:
try:
data = collection.import_collection(f,
filename,
logger=logger,
cfg=cfg)
except ImporterError as e:
logger.error(
f'The import failed for the following reason: {str(e)}')
return None
except Exception:
logger.exception('Unexpected error occurred:')
return None
logger.info('Importer processing completed successfully')
return data
def call_importer(file):
"""Returns result of galaxy_importer import process.
:param file: Artifact file to import.
"""
data = collection.import_collection(file)
if data['result'] == 'completed':
print('Importer processing completed successfully')
else:
print(f'Error during importer proccessing: {data["error"]}')
return data
def call_importer(filepath):
"""Returns result of galaxy_importer import process.
:param file: Artifact file to import.
"""
match = FILENAME_REGEXP.match(os.path.basename(filepath))
namespace, name, version = match.groups()
filename = collection.CollectionFilename(namespace, name, version)
with open(filepath, 'rb') as f:
try:
data = collection.import_collection(f, filename)
except Exception:
logging.error('Error during importer proccessing:', exc_info=True)
return None
logging.info('Importer processing completed successfully')
return data
def test_import_collection(mocker):
mocker.patch.object(collection, '_import_collection')
mocker.patch.object(ConfigFile, 'load')
collection.import_collection(file=None, logger=logging, cfg=None)
assert ConfigFile.load.called
assert collection._import_collection.called
def test_import_collection(mocker):
mocker.patch.object(collection, "_import_collection")
mocker.patch.object(config.ConfigFile, "load")
collection.import_collection(file="file_placeholder", logger=logging, cfg=None)
assert config.ConfigFile.load.called
assert collection._import_collection.called
