def test_abort_error_gene_symbol(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_mirna_for_specific_interaction(
gene_symbol=["foobar"], between=True), 404)
def test_abort_error_ensg_and_gene_type(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_mirna_for_specific_interaction(
ensg_number=["ENSGfoobar"], gene_type="foobar"), 404)
def test_abort_no_data(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_mirna_for_specific_interaction(
disease_name="bladder urothelial carcinoma",
gene_type='lincRNA'), 404)
def test_miRNAInteraction_findceRNA_disease_and_type(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_mirna_for_specific_interaction(
disease_name='bladder urothelial carcinoma',
gene_type='protein_coding')
# retrieve current API response to request
api_response = geneInteraction.read_mirna_for_specific_interaction(
disease_name='bladder urothelial carcinoma',
gene_type='protein_coding')
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_miRNAInteraction_findceRNA_disease_and_ensg(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_mirna_for_specific_interaction(
disease_name='bladder urothelial carcinoma',
ensg_number=['ENSG00000007312', 'ENSG00000113657'])
# retrieve current API response to request
api_response = geneInteraction.read_mirna_for_specific_interaction(
disease_name='bladder urothelial carcinoma',
ensg_number=['ENSG00000007312', 'ENSG00000113657'])
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_miRNAInteraction_findceRNA_disease_and_symbol(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_mirna_for_specific_interaction(
disease_name='head and neck squamous cell carcinoma',
gene_symbol=['CFTR', 'AOC1'],
between=True)
# retrieve current API response to request
api_response = geneInteraction.read_mirna_for_specific_interaction(
disease_name='head and neck squamous cell carcinoma',
gene_symbol=['CFTR', 'AOC1'],
between=True)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
