def checkCandidate(candidate, results, peptide):
rna_complement = genome.transpose_rna(genome.reversecomplement(candidate))
rna = genome.transpose_rna(candidate)
if genome.encodeProtein(rna) == peptide:
results.append(candidate)
elif genome.encodeProtein(rna_complement) == peptide:
results.append(candidate)
k = 10
d = 3
inFile = open('dataset_8_6.txt', 'r')
#inFile.readline()
text = inFile.readline().strip()
# k = int(inFile.readline().strip())
# d = int(inFile.readline().strip())
inFile.close()
i=0
results={}
while i <= len(text) - k:
section = text[i:i + k]
dict = set()
generateMatches(section, dict, d)
addMatchesToResults(results, dict)
i += 1
for (k, v) in results.items():
complement = genome.reversecomplement(k)
if (complement in results) and (k < complement):
results[k] += results[complement]
results[complement] += v
highestFrequency = max(results.values())
for i in [k for k, v in results.items() if v == highestFrequency]:
print i,
