def main(param_file=None):

    # setup
    p, base_path, output_dir = tools.setup(param_file)
    result_path = path.join(base_path, p['result_path'])
    logger = tools.get_logger('gensim', path.join(output_dir, "run.log"))
    logger.info("running %s" % ' '.join(sys.argv))

    logger.info('load the articles..')
    article_path = path.join(result_path, p['article_label'])
    wiki = pickle.load(open(path.join(article_path, 'articles.pickle')))

    logger.info('load dictionary and models')
    dictionary = Dictionary.load(path.join(result_path,
                                           p['model_label'],
                                           'dic.dict'))
    model_path = path.join(result_path, p['model_label'])
    lsi = LsiModel.load(path.join(model_path, 'lsi.model'))
    pre = pickle.load(open(path.join(model_path, 'pre.model')))
    if int(p['num_topics']) > lsi.num_topics:
        logger.error('model to small')
    lsi.num_topics = int(p['num_topics'])

    data = {}
    for topic, entries in wiki.iteritems():
        logger.info('working on: %s' % topic)

        data[topic] = {}
        data[topic]['keys'] = []
        vecs = []
        data[topic]['ratings'] = []
        for key, val in entries.iteritems():
            data[topic]['keys'].append(key)
            vecs.append(lsi[pre[dictionary.doc2bow(val['text'])]])
            data[topic]['ratings'].append(val['rating'])
        data[topic]['vecs'] = np.squeeze(np.array(vecs)[:, :, 1:2]).T

        U, d, _ = np.linalg.svd(data[topic]['vecs'], full_matrices=False)
        data[topic]['U'] = U
        data[topic]['d'] = d

    f = open(os.path.join(output_dir, "data.pickle"), 'wb')
    pickle.dump(data, f)
def main(param_file=None):

    # setup
    p, base_path, output_dir = tools.setup(param_file)
    result_path = path.join(base_path, p['result_path'])
    logger = tools.get_logger('gensim', path.join(output_dir, "run.log"))
    logger.info("running %s" % ' '.join(sys.argv))

    logger.info('loading models and dictionary')
    dictionary = Dictionary.load(path.join(result_path,
                                           p['model_label'],
                                           'dic.dict'))
    model_path = path.join(result_path, p['model_label'])
    lsi = LsiModel.load(path.join(model_path, 'lsi.model'))
    pre = pickle.load(open(path.join(model_path, 'pre.model')))
    lsi.num_topics = p['num_topics']

    logger.info('load wikipedia articles')
    article_path = path.join(result_path, p['article_label'])
    wiki = pickle.load(open(path.join(article_path, 'articles.pickle')))

    times = np.zeros((1, len(wiki)))
    count = 0
    for query_key, query in wiki.iteritems():
        logger.info("working on: %s" % query_key)
        n = len(query)
        human = [val['rating'] for val in query.itervalues()]

        t0 = time.time()
        corpus = [lsi[pre[dictionary.doc2bow(val['text'])]]
                    for val in query.itervalues()]
        sim_res = MatrixSimilarity(corpus)[corpus]
        sim_res.save(path.join(output_dir, 'sim_' + query_key))
        avg = np.mean(sim_res, axis=0)
        idx = np.argsort(avg)
        times[count] = time.time() - t0

        # compute correlation with human rating
        res = np.zeros((n, 1))
        for i in range(n):
            human_r = [human[j] for j in idx[i:]]
            res[i, 0] = np.mean(human_r)

        # plot correlation
        fig = plt.figure()
        ax = fig.add_subplot(3, 1, 1)
        ax.plot(res)

        ax = fig.add_subplot(3, 1, 2)
        ratings = [val['rating'] for val in query.itervalues()]
        ax.scatter(avg[idx], [ratings[i] for i in idx])

        # plot similarity distribution
        ax = fig.add_subplot(3, 1, 3)
        ax.bar(range(n), avg[idx])

        # Set the x tick labels to the group_labels defined above and rotate
        ax.set_xticks(range(n))
        k = [key + ' ' + str(query[key]['rating']) for key in query.keys()]
        ax.set_xticklabels([k[i] for i in idx])
        fig.autofmt_xdate()
        plt.savefig(path.join(output_dir, query_key + '.' + p['format']))
        plt.close()
    logger.info('average similarity calculation time: %f' % np.mean(times))