def loadFromFile(self, fileName):
"""
loads from fileName, a plain text .paramnames file or a "full" yaml file
"""
self.filenameLoadedFrom = os.path.split(fileName)[1]
extension = os.path.splitext(fileName)[-1]
if extension == '.paramnames':
with open(fileName) as f:
self.names = [
ParamInfo(line) for line in [s.strip() for s in f]
if line != ''
]
elif extension.lower() in ('.yaml', '.yml'):
info_params = load_info_params(fileName)
# first sampled, then derived
self.names = [
ParamInfo(param + " " + ((info or {}).get("latex", param)))
for param, info in info_params.items()
if is_sampled_param(info)
]
self.names += [
ParamInfo(param + " " + ((info or {}).get("latex", param)))
for param, info in info_params.items()
if is_derived_param(info)
]
def loadFromFile(self, fileName):
"""
loads from fileName, a plain text .paramnames file or a "full" yaml file
"""
self.filenameLoadedFrom = os.path.split(fileName)[1]
extension = os.path.splitext(fileName)[-1]
if extension == '.paramnames':
with open(fileName) as f:
self.names = [
ParamInfo(line) for line in [s.strip() for s in f]
if line != ''
]
elif extension.lower() in ('.yaml', '.yml'):
from getdist.yaml_format_tools import yaml_load_file, get_info_params
from getdist.yaml_format_tools import is_sampled_param, is_derived_param
from getdist.yaml_format_tools import _p_label, _p_renames
info_params = get_info_params(yaml_load_file(fileName))
# first sampled, then derived
self.names = [
ParamInfo(name=param,
label=(info or {}).get(_p_label, param),
renames=(info or {}).get(_p_renames))
for param, info in info_params.items()
if is_sampled_param(info)
]
self.names += [
ParamInfo(name=param,
label=(info or {}).get(_p_label, param),
renames=(info or {}).get(_p_renames),
derived=True) for param, info in info_params.items()
if is_derived_param(info)
]
def loadFromFile(self, fileName):
self.filenameLoadedFrom = os.path.split(fileName)[1]
extension = os.path.splitext(fileName)[-1]
if extension in ('.ranges', '.bounds'):
with open(fileName) as f:
for line in f:
strings = [text.strip() for text in line.split()]
if len(strings) == 3:
self.setRange(strings[0], strings[1:])
elif extension in ('.yaml', '.yml'):
info_params = load_info_params(fileName)
for p, info in info_params.items():
# Sampled
if is_sampled_param(info):
info_lims = dict([[l,info["prior"].get(l)]
for l in ["min", "max", "loc", "scale"]])
if info_lims["min"] != None or info_lims["max"] != None:
lims = [info["prior"].get("min"), info["prior"].get("max")]
elif info_lims["loc"] != None or info_lims["scale"] != None:
dist = info["prior"].pop("dist", "uniform")
pdf_dist = getattr(import_module("scipy.stats", dist), dist)
lims = pdf_dist.interval(1, **info["prior"])
# Derived
elif is_derived_param(info):
lims = (lambda i: [i.get("min", -np.inf), i.get("max", np.inf)])(info or {})
# Fixed
else:
continue
self.setRange(p, lims)
def loadFromFile(self, fileName):
"""
loads from fileName, a plain text .paramnames file or a "full" yaml file
"""
self.filenameLoadedFrom = os.path.split(fileName)[1]
extension = os.path.splitext(fileName)[-1]
if extension == '.paramnames':
with open(fileName) as f:
self.names = [ParamInfo(line) for line in [s.strip() for s in f] if line != '']
elif extension.lower() in ('.yaml', '.yml'):
from getdist.yaml_format_tools import yaml_load_file, get_info_params
from getdist.yaml_format_tools import is_sampled_param, is_derived_param
from getdist.yaml_format_tools import _p_label, _p_renames
info_params = get_info_params(yaml_load_file(fileName))
# first sampled, then derived
self.names = [ParamInfo(name=param, label=(info or {}).get(_p_label, param),
renames=(info or {}).get(_p_renames))
for param, info in info_params.items() if is_sampled_param(info)]
self.names += [ParamInfo(name=param, label=(info or {}).get(_p_label, param),
renames=(info or {}).get(_p_renames), derived=True)
for param, info in info_params.items() if is_derived_param(info)]