def setAxesDesc(self,
template='',
x='',
y='',
z='',
r='',
theta='',
phi=''):
from string import lower
from gfuncs import error
if lower(template) == 'ISO 31-11':
r, theta, phi = 'Radial distance', 'Inclination angle', 'Azimuthal angle'
elif lower(template) == 'hugin':
x, y, z = 'Along track', 'Cross track', 'Depth'
r, theta, phi = 'Range', 'Look angle', 'Slant angle'
if self.desc == 'Cartesian':
self.units = (x, y, z)
elif self.desc == 'Spherical':
self.units = (r, theta, phi)
else:
error(self, 'Unknown coordinate system.')
def load(self, desc=''):
db = Configurable.__db__
conf = db.open(type='configuration', mode='r')
db.close('configuration')
if not desc in conf:
error(self, 'A configuration with the description \''+desc+'\' does not exist')
raise Exception('')
return
# id = self.getConfId(desc, conf)
# if id != None:
# self.__id__ = id
# else:
# error(self, 'A configuration with the description \''+desc+'\' does not exist')
# Remove the date and description
conf[desc].pop('date')
conf[desc].pop('desc')
# Open the database
db_root = db.open(type='system', mode='a')
# Let the fun begin getattr(db_root,'i%d'%self.__id__)
Configurable.__load__(self, db_root, conf[desc]['s'])
# Close the database
db.close()
Configurable.__refreshEclipse__(self)
def load(self, desc=''):
db = Configurable.__db__
conf = db.open(type='configuration', mode='r')
db.close('configuration')
if not desc in conf:
error(
self, 'A configuration with the description \'' + desc +
'\' does not exist')
raise Exception('')
return
# id = self.getConfId(desc, conf)
# if id != None:
# self.__id__ = id
# else:
# error(self, 'A configuration with the description \''+desc+'\' does not exist')
# Remove the date and description
conf[desc].pop('date')
conf[desc].pop('desc')
# Open the database
db_root = db.open(type='system', mode='a')
# Let the fun begin getattr(db_root,'i%d'%self.__id__)
Configurable.__load__(self, db_root, conf[desc]['s'])
# Close the database
db.close()
Configurable.__refreshEclipse__(self)
def save(self, node, key, val, type='data'):
'''
obj_key The variable that points to the object being stored
obj_type The type of the object being stored
id The configuration number being used
keys The variables in the object
vals and their values
'''
# If a groupname is supplied, open/create it and enter that group
if type == 'group' and pl.is_string_like(key):
try:
node = self.h5f.getNode(node, key)
except:
node = self.h5f.createGroup(node, key, filters=self.FILTERS)
# If an id is supplied, make a group for it and enter that group
elif type == 'id' and pl.is_numlike(key):
try:
node = self.h5f.getNode(node, "i%d" % key)
except:
node = self.h5f.createGroup(node,
"i%d" % key,
filters=self.FILTERS)
# When data is supplied, add it (and overwrite any data that was there before)
elif type == 'data':
if key == None:
key = 'None'
elif not pl.is_string_like(key):
error(self, 'This should not happen...')
try:
self.h5f.removeNode(node, key)
except:
pass
if issubclass(val.__class__, np.ndarray):
# Empty tuples not supported by pytables. Fix by reshaping to (1,)
if val.shape == ():
val = val.reshape((1, ))
atom = tb.Atom.from_dtype(val.dtype)
new_node = self.h5f.createCArray(node,
key,
atom,
val.shape,
filters=self.FILTERS)
new_node[:] = val[:]
else:
self.h5f.createArray(node, key, val)
else:
error(self, 'Hmm? Either \'type\' or \'key\' is of shitty format.')
node = self.h5f.root
return node
def __new__(self, type='rect', **kwargs):
from gfuncs import error
if type == 'rect':
return self.rect(self, kwargs)
elif type == 'kaiser':
return self.kaiser(kwargs)
else:
error(self, 'The window type %s is not recognised' % type)
def setAxesUnits(self, x='m', y='m', z='m', r='m', theta='rad', phi='rad'):
from gfuncs import error
if self.desc == 'Cartesian':
self.units = (x, y, z)
elif self.desc == 'Spherical':
self.units = (r, theta, phi)
else:
error(self, 'Unknown coordinate system.')
def setAxesUnits(self, x='m',y='m',z='m',r='m',theta='rad',phi='rad'):
from gfuncs import error
if self.desc == 'Cartesian':
self.units = (x,y,z)
elif self.desc == 'Spherical':
self.units = (r,theta,phi)
else:
error(self, 'Unknown coordinate system.')
def save(self, node, key, val, type='data'):
'''
obj_key The variable that points to the object being stored
obj_type The type of the object being stored
id The configuration number being used
keys The variables in the object
vals and their values
'''
# If a groupname is supplied, open/create it and enter that group
if type=='group' and pl.is_string_like(key):
try:
node = self.h5f.getNode(node, key)
except:
node = self.h5f.createGroup(node, key, filters=self.FILTERS)
# If an id is supplied, make a group for it and enter that group
elif type=='id' and pl.is_numlike(key):
try:
node = self.h5f.getNode(node, "i%d"%key)
except:
node = self.h5f.createGroup(node, "i%d"%key, filters=self.FILTERS)
# When data is supplied, add it (and overwrite any data that was there before)
elif type=='data':
if key == None:
key = 'None'
elif not pl.is_string_like(key):
error(self, 'This should not happen...')
try:
self.h5f.removeNode(node, key)
except:
pass
if issubclass(val.__class__, np.ndarray):
# Empty tuples not supported by pytables. Fix by reshaping to (1,)
if val.shape == ():
val = val.reshape((1,))
atom = tb.Atom.from_dtype(val.dtype)
new_node = self.h5f.createCArray(node, key, atom, val.shape, filters=self.FILTERS)
new_node[:] = val[:]
else:
self.h5f.createArray(node, key, val)
else:
error(self, 'Hmm? Either \'type\' or \'key\' is of shitty format.')
node = self.h5f.root
return node
def delay(system=None, X=None):
# If a system is supplied, attempt to find the relevant parameters
if system != None:
try:
X = system.findAttr('X')
except:
error('Unable to find the relevant parameters in supplied system. Aborting.')
pass
if X==None:
error('One or more of the required parameters are \'None\'. Aborting.')
return
def setAxesDesc(self, template='',
x='',y='',z='',
r='',theta='',phi=''):
from string import lower
from gfuncs import error
if lower(template)=='ISO 31-11':
r,theta,phi = 'Radial distance', 'Inclination angle', 'Azimuthal angle'
elif lower(template)=='hugin':
x,y,z = 'Along track', 'Cross track', 'Depth'
r,theta,phi = 'Range', 'Look angle', 'Slant angle'
if self.desc == 'Cartesian':
self.units = (x,y,z)
elif self.desc == 'Spherical':
self.units = (r,theta,phi)
else:
error(self, 'Unknown coordinate system.')
def loadConf(self, conf, *args):
# Check the supplied object type
if conf.__class__.__name__ != 'Config':
error(self, 'Supplied object is not of type \'Config\'')
return
# Process the optional arguments
# default_opts = {}
# opts = processArgs(args, default_opts)
ok_list = ''
fail_list = ''
has_id = False
# Iterate over all class instance variables
for key,val in self.__dict__.iteritems():
# If the variable is another configurable class, call its loadConf()
if issubclass(val.__class__, Configurable):
val.loadConf(conf)
else:
# Check that a configuration record exists for this class
self_name = self.__class__.__name__
if not conf.has_key(self_name):
warning(self, 'This class has no conf-record.')
# If it exists, retrieve the data
else:
if conf[self_name].has_key(key):
setattr(self, key, conf[self_name][key])
ok_list += ' '+key
if key == 'id':
has_id = True
else:
fail_list += ' '+key
warning(self,'')
print ' OK: '+ok_list
print ' NA: '+fail_list# '+self_name+': '+key
def loadConf(self, conf, *args):
# Check the supplied object type
if conf.__class__.__name__ != 'Config':
error(self, 'Supplied object is not of type \'Config\'')
return
# Process the optional arguments
# default_opts = {}
# opts = processArgs(args, default_opts)
ok_list = ''
fail_list = ''
has_id = False
# Iterate over all class instance variables
for key, val in self.__dict__.iteritems():
# If the variable is another configurable class, call its loadConf()
if issubclass(val.__class__, Configurable):
val.loadConf(conf)
else:
# Check that a configuration record exists for this class
self_name = self.__class__.__name__
if not conf.has_key(self_name):
warning(self, 'This class has no conf-record.')
# If it exists, retrieve the data
else:
if conf[self_name].has_key(key):
setattr(self, key, conf[self_name][key])
ok_list += ' ' + key
if key == 'id':
has_id = True
else:
fail_list += ' ' + key
warning(self, '')
print ' OK: ' + ok_list
print ' NA: ' + fail_list # '+self_name+': '+key
def open(self, type='system', mode='r'):
if type == 'system':
# Make sure the file is not open, and return the root node
if not self.db_open:
self.h5f = tb.openFile(self.DATABASE_FILE, mode=mode)
self.db_open = True
return self.h5f.getNode(self.h5f.root)
else:
error(self, 'System database is already open. Close it first.')
elif type == 'configuration':
# Create the file if it does not exist
if not os.path.exists(self.CONFIGURATION_FILE):
self.cf = open(self.CONFIGURATION_FILE, mode='w')
empty_dict = {}
pickle.dump(empty_dict, self.cf)
self.cf.close()
# Make sure the file is not already open, then return the file pointer
if not self.conf_open:
self.cf = open(self.CONFIGURATION_FILE, mode=mode)
self.conf_open = True
if mode == 'r':
try:
return pickle.load(self.cf)
except:
info(
self, 'Loaded empty file \'' +
self.CONFIGURATION_FILE + '\'')
return {}
else:
error(self, 'System database is already open. Close it first.')
else:
error(self, 'Database type \'' + type + '\' is unknown.')
def open(self, type='system', mode='r'):
if type == 'system':
# Make sure the file is not open, and return the root node
if not self.db_open:
self.h5f = tb.openFile( self.DATABASE_FILE, mode=mode )
self.db_open = True
return self.h5f.getNode( self.h5f.root )
else:
error(self, 'System database is already open. Close it first.')
elif type == 'configuration':
# Create the file if it does not exist
if not os.path.exists(self.CONFIGURATION_FILE):
self.cf = open( self.CONFIGURATION_FILE, mode='w' )
empty_dict = {}
pickle.dump(empty_dict,self.cf)
self.cf.close()
# Make sure the file is not already open, then return the file pointer
if not self.conf_open:
self.cf = open( self.CONFIGURATION_FILE, mode=mode )
self.conf_open = True
if mode == 'r':
try:
return pickle.load(self.cf)
except:
info(self, 'Loaded empty file \''+self.CONFIGURATION_FILE+'\'')
return {}
else:
error(self, 'System database is already open. Close it first.')
else:
error(self, 'Database type \''+type+'\' is unknown.')
def flush(self):
if self.db_open == True:
self.h5f.flush()
else:
error(self, 'Flushing not supported for this db-type.')
def W(p=None, w=None, k=None, fc=100e3, c=1480, N=500):
if p==None:
error('\'p\' are missing. Aborting.')
return
if k!=None:
k_abs = k
elif p!=None and fc!=None and c!=None:
k_abs = 2*pi*fc/c
else:
error('Either \'k\', or \'c\' and \'fc\' must be supplied. Aborting.')
return
theta = np.linspace(-0.5,0.5,N)*pi
k = Coordinate(r=k_abs, theta=theta, phi=None)
def compute_W(ax,ay,az, w):
Wx = dot( ax, w )
Wy = dot( ay, w )
Wz = dot( az, w )
Wxyz = vstack((Wx,Wy,Wz)).T
return Wxyz
# pT = p.T.copy()
ax = exp(1j*outer( k[:,0], p[:,0]))
ay = exp(1j*outer( k[:,1], p[:,1]))
az = exp(1j*outer( k[:,2], p[:,2]))
if type(w) == list:
W = []
for wi in w:
W.append(compute_W(ax,ay,az, wi))
elif is_np_array_type(w.__class__):
if w.ndim == 1:
W = []
W.append( compute_W(ax,ay,az,w) )
elif w.ndim == 2:
W1 = compute_W(ax,ay,az,w[0])
W = np.zeros((w.shape[0],W1.shape[0],W1.shape[1]),dtype=W1.dtype)
W[0] = W1
for i in range(1,w.shape[0]):
W[i] = compute_W(ax,ay,az, w[i])
elif w.ndim == 3:
W1 = compute_W(ax,ay,az,w[0,0]) # Not exactly efficient, but shouldn't be noticeable
W = np.zeros((w.shape[0],w.shape[1],W1.shape[0],W1.shape[1]),dtype=W1.dtype)
for i in range(0,w.shape[0]):
for j in range(0,w.shape[1]):
W[i,j] = compute_W(ax,ay,az, w[i,j])
else:
print 'EE: Not implemented.'
else:
W = []
W.append( compute_W(ax,ay,az,w) )
return W
def dump(self, data):
if self.conf_open == True:
pickle.dump(data, self.cf)
else:
error(self, 'This db-type does not support dumping.')
def dump(self, data):
if self.conf_open == True:
pickle.dump(data, self.cf)
else:
error(self, 'This db-type does not support dumping.')
def flush(self):
if self.db_open == True:
self.h5f.flush()
else:
error(self, 'Flushing not supported for this db-type.')