def test_parse_embedded_parentheses_uniprot_3():
txt = ('Solute carrier family 13 member 3 (Na(+)/dicarboxylate ' \
'cotransporter 3, NaDC-3, rNaDC3) (Sodium-dependent high-affinity' \
' dicarboxylate transporter 2)')
syms = parse_uniprot_synonyms(txt)
assert syms == \
['Solute carrier family 13 member 3',
'Na(+)/dicarboxylate cotransporter 3, NaDC-3, rNaDC3',
'Sodium-dependent high-affinity dicarboxylate transporter 2']
def test_parse_embedded_parentheses_uniprot():
txt = ('Sodium-coupled neutral amino acid transporter 4 (Amino acid '
'transporter A3) (Na(+)-coupled neutral amino acid transporter 4)'
' (Solute carrier family 38 member 4) (System A amino acid '
'transporter 3)')
syms = parse_uniprot_synonyms(txt)
for s in syms:
assert not s.endswith(' '), '"%s"' % s
assert len(syms) == 5, syms
assert 'System A amino acid transporter 3' in syms
def test_parse_embedded_parentheses_uniprot_2():
txt = ('Na(+)/H(+) exchange regulatory cofactor NHE-RF1 (NHERF-1) '
'(Ezrin-radixin-moesin-binding phosphoprotein 50) (EBP50)'
' (Regulatory cofactor of Na(+)/H(+) exchanger) '
'(Sodium-hydrogen exchanger regulatory factor 1) '
'(Solute carrier family 9 isoform A3 regulatory factor 1)')
syms = parse_uniprot_synonyms(txt)
for s in syms:
assert not s == '+/', '"%s"' % s
assert len(syms) == 7, syms
assert 'Na(+)/H(+) exchange regulatory cofactor NHE-RF1' in syms, syms
def test_parse_parentheses_in_name():
txt = 'DNA (cytosine-5)-methyltransferase 1 (EC:2.1.1.37)'
syms = parse_uniprot_synonyms(txt)
assert syms == ['DNA (cytosine-5)-methyltransferase 1', 'EC:2.1.1.37'], \
syms