def test11_slice_motif(self):
pfm = [
[120, 0, 0, 0],
[120, 0, 0, 0],
[0, 60, 60, 0],
[0, 0, 0, 120],
[0, 0, 0, 120],
]
m = Motif(pfm)
m.to_consensus()
# take slice
m2 = m[1:-1]
self.assertEqual("AST", m2.consensus.upper())
self.assertEqual(pfm[1:-1], m2.pfm)
def test4_motif_consensus(self):
""" Motif length """
m = Motif(self.pfm)
self.assertEqual("ACGTmskrwy", m.to_consensus())