def test3_gff_enrichment(self):
""" Test gff_enrichment """
self.motif.pwm_scan_to_gff(self.random, self.random_gff)
gff_enrichment(self.prom_gff, self.random_gff, 316, 3160, self.tmp)
f = open(self.tmp)
f.readline() # Header
vals = f.readline().strip().split("\t")
self.assertEquals(vals[0], "TATA-box")
self.assertLess(float(vals[2]), 1e-60)
self.assertGreater(float(vals[5]), 1.5)
def test3_gff_enrichment(self):
""" Test gff_enrichment """
self.motif.pwm_scan_to_gff(self.random, self.random_gff)
gff_enrichment(self.prom_gff, self.random_gff, 316, 3160, self.tmp)
f = open(self.tmp)
f.readline() # Header
vals = f.readline().strip().split("\t")
self.assertEquals(vals[0], "TATA-box")
self.assertLess(float(vals[2]), 1e-60)
self.assertGreater(float(vals[5]), 1.5)
def test3_gff_enrichment(self): """ Test gff_enrichment """ self.motif.pwm_scan_to_gff(self.random, self.random_gff) gff_enrichment(self.prom_gff, self.random_gff, 316, 3160, self.tmp) self.assertEquals(open(self.enrichment).read(), open(self.tmp).read())
def test3_gff_enrichment(self):
""" Test gff_enrichment """
self.motif.pwm_scan_to_gff(self.random, self.random_gff)
gff_enrichment(self.prom_gff, self.random_gff, 316, 3160, self.tmp)
self.assertEquals(open(self.enrichment).read(), open(self.tmp).read())